PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027111552.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 1743aa MW: 189597 Da PI: 6.3439

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027111552.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.2	9e-09	839	880	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT eE e + d + +G++ +++Ia+ + ++t +c+++++k XP_027111552.1 839 PWTSEEKEMFMDKLAVHGKD-FTKIASFLV-HKTTADCVEFYYK 880 8***************99.*****.*********98 PP
2	Myb_DNA-binding	33.4	1.1e-10	1058	1098	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT eE ++++av +G++ ++ I+r++ +R+++qck ++ XP_027111552.1 1058 DWTDEEKAIFIQAVSSYGKD-FAMISRYVS-TRSREQCKVFFS 1098 5***************99.*****.******8876 PP

Sequence ? help Back to Top
Protein Sequence Length: 1743 aa Download sequence
MPPEPLPWDR KDFFKERKHE RQEPYHHHHH HHHLHPTGGG GGGGGGYGGG IGGFGGGPRW 60 REPPHPHPHP YHYASPRWVS DFRYRPPPGY GKQGGRHLYP EESSHGFVPS RPSDRVFEDE 120 NCRGSVSGKY SRSNRESRGP FGQKDWKGQS WEATPSPNAP GRPLETSDQH RSVDEMQTCT 180 SSHPHLDSAN SWDQSHLKDQ HEKSSGVVNA LGSSGQRLER ENSLGSMDWK PLKWTRSGSL 240 SSRGSGFSHS SSSKSMGADS NEMKAEVQPS NVTPVQSPSG NAATPVAAPA AAYETSAGAS 300 EEMSSRKKPR LGWGEGLAKY EKKKVEGVDD TTLKNGTIIC SSSREPLHLH SSHLADKSPR 360 ITAFSDCASP ATPSSVGCSS SPGLEEKQFI KAPSVDNEAT NLSPSIASQD HRDHIEGATF 420 NLENLDLAES GHFNSAINEL LLSDDLISVD SGFVKSTAIN KLLVWKGDVL KKLEMTESEI 480 DRLEGELKTL ASIPESSCHH PAVSSSLPMD CFSKPAEEQD VTSSISHRPA LLDLGSSGHN 540 DAEKMPNVLV DDDAKVKDED VDSPGSATSK FVEVVSSGKD ASPSEPGSEP GNDSVCISNT 600 DCAMSKNLEL SYVGNGVHED NGGENFQLVA SCSPTHLDEI SLCDDKELKL CESIFASNKE 660 SASRAAEVFN KLLPADLCKF DISGVCSLKS NSIVKENFLR RKRFQQFKER CIALKYRALQ 720 HLWKADVCSL SMRRFRVKSH KKLDLSLRTV LNSSQKHRTS FRSRLSSHDG NVSSGSNTVM 780 MNFISKLLSD SQVKPCRDTL KMPAMILDKK EKMISRFISS NGLVEDPSAV EKERSMINPW 840 TSEEKEMFMD KLAVHGKDFT KIASFLVHKT TADCVEFYYK NHKSDCLKKT KKHPEYPKQG 900 KSYTANNYLV ASGKRWHCEA NAASLDILGA ASAIAANVDD GMEIQQTSTS KYLLGRSSDY 960 KSSKGDNGLL ERLSSLDADN NERETAAADV LAGICGSLSS EAMSSCITSA VDPGEGYHEW 1020 KYSRVGSSSR LPLTPEAMQN GDEDTCSDES CGEMDPTDWT DEEKAIFIQA VSSYGKDFAM 1080 ISRYVSTRSR EQCKVFFSKA RKCLGLDMIS PGPGNVVRRD ASGGSDTDDV GVVETGSITC 1140 SEKSGVKLEV DLPCPEVKLN IEPDSAGLAN VNPDLNHLEE ISGTGDRAAV EAGLQSKNLT 1200 DDSQMEEKPE QEADGNGDIQ SVHSGEVEQG TAVTTRGVGE TSDSANTLDT QIHSGALEKR 1260 DEHLDAEMEG LSPVSWESSI NDRKEKDDAN QKDVNGMDQD LKSTPDGDIS GDRQIGVLET 1320 DSVGRPCVVP IEQNGFPAPM KSVPQSCAVK CQTPNEATSS ALEAVKISGE QGHQVTRVGE 1380 KLRSGSSLLG SVDPCQILKG YPLPPSTTRE VNGNSSCRRS ATPQSFPKVD NNFHRDRHLA 1440 HDSYLQKCNG VKHYSSIAEL PFKFREQSRD INPDHQSGSP SDVEKPRRNG DVKLFGQILT 1500 KPSYQPKSSS SRQQNGDNEN QQSKIGKPLG TKFASDQAIG GNLSQTKLDR NNLLGTENLP 1560 VRSFAYWDGS RIQTGLHSLP DSAMLLAKYP AAFGNYVLPS SKLEQLPVHG VNNGERSLNG 1620 SAVFPAREIG SSNAAADYQA YRSRELQPFT LDMKQRQDAV LSEMHRRNGF DVVSGMQQAA 1680 RGLVGINVVS RAGILVGGQC TGVSDPVAAI KMHYSKAEQL NGGQTASIIR EDDSWRGKGS 1740 IGR

Sequence ? help Back to Top

Protein Sequence Length: 1743 aa Download sequence

MPPEPLPWDR KDFFKERKHE RQEPYHHHHH HHHLHPTGGG GGGGGGYGGG IGGFGGGPRW  60
REPPHPHPHP YHYASPRWVS DFRYRPPPGY GKQGGRHLYP EESSHGFVPS RPSDRVFEDE  120
NCRGSVSGKY SRSNRESRGP FGQKDWKGQS WEATPSPNAP GRPLETSDQH RSVDEMQTCT  180
SSHPHLDSAN SWDQSHLKDQ HEKSSGVVNA LGSSGQRLER ENSLGSMDWK PLKWTRSGSL  240
SSRGSGFSHS SSSKSMGADS NEMKAEVQPS NVTPVQSPSG NAATPVAAPA AAYETSAGAS  300
EEMSSRKKPR LGWGEGLAKY EKKKVEGVDD TTLKNGTIIC SSSREPLHLH SSHLADKSPR  360
ITAFSDCASP ATPSSVGCSS SPGLEEKQFI KAPSVDNEAT NLSPSIASQD HRDHIEGATF  420
NLENLDLAES GHFNSAINEL LLSDDLISVD SGFVKSTAIN KLLVWKGDVL KKLEMTESEI  480
DRLEGELKTL ASIPESSCHH PAVSSSLPMD CFSKPAEEQD VTSSISHRPA LLDLGSSGHN  540
DAEKMPNVLV DDDAKVKDED VDSPGSATSK FVEVVSSGKD ASPSEPGSEP GNDSVCISNT  600
DCAMSKNLEL SYVGNGVHED NGGENFQLVA SCSPTHLDEI SLCDDKELKL CESIFASNKE  660
SASRAAEVFN KLLPADLCKF DISGVCSLKS NSIVKENFLR RKRFQQFKER CIALKYRALQ  720
HLWKADVCSL SMRRFRVKSH KKLDLSLRTV LNSSQKHRTS FRSRLSSHDG NVSSGSNTVM  780
MNFISKLLSD SQVKPCRDTL KMPAMILDKK EKMISRFISS NGLVEDPSAV EKERSMINPW  840
TSEEKEMFMD KLAVHGKDFT KIASFLVHKT TADCVEFYYK NHKSDCLKKT KKHPEYPKQG  900
KSYTANNYLV ASGKRWHCEA NAASLDILGA ASAIAANVDD GMEIQQTSTS KYLLGRSSDY  960
KSSKGDNGLL ERLSSLDADN NERETAAADV LAGICGSLSS EAMSSCITSA VDPGEGYHEW  1020
KYSRVGSSSR LPLTPEAMQN GDEDTCSDES CGEMDPTDWT DEEKAIFIQA VSSYGKDFAM  1080
ISRYVSTRSR EQCKVFFSKA RKCLGLDMIS PGPGNVVRRD ASGGSDTDDV GVVETGSITC  1140
SEKSGVKLEV DLPCPEVKLN IEPDSAGLAN VNPDLNHLEE ISGTGDRAAV EAGLQSKNLT  1200
DDSQMEEKPE QEADGNGDIQ SVHSGEVEQG TAVTTRGVGE TSDSANTLDT QIHSGALEKR  1260
DEHLDAEMEG LSPVSWESSI NDRKEKDDAN QKDVNGMDQD LKSTPDGDIS GDRQIGVLET  1320
DSVGRPCVVP IEQNGFPAPM KSVPQSCAVK CQTPNEATSS ALEAVKISGE QGHQVTRVGE  1380
KLRSGSSLLG SVDPCQILKG YPLPPSTTRE VNGNSSCRRS ATPQSFPKVD NNFHRDRHLA  1440
HDSYLQKCNG VKHYSSIAEL PFKFREQSRD INPDHQSGSP SDVEKPRRNG DVKLFGQILT  1500
KPSYQPKSSS SRQQNGDNEN QQSKIGKPLG TKFASDQAIG GNLSQTKLDR NNLLGTENLP  1560
VRSFAYWDGS RIQTGLHSLP DSAMLLAKYP AAFGNYVLPS SKLEQLPVHG VNNGERSLNG  1620
SAVFPAREIG SSNAAADYQA YRSRELQPFT LDMKQRQDAV LSEMHRRNGF DVVSGMQQAA  1680
RGLVGINVVS RAGILVGGQC TGVSDPVAAI KMHYSKAEQL NGGQTASIIR EDDSWRGKGS  1740
IGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-110	MYB family protein