PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027110974.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 725aa    MW: 81678.4 Da    PI: 6.656
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027110974.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS398.47.2e-1223527221374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL+ cA+av+++d + a+++L+++++++sp+gd mqRla+yf+ +L+ar+a+s++++ykal + +ts    +++l+a++l+  ++P+ k+s+
  XP_027110974.1 352 LRTLLTLCAQAVAADDRRTANEFLKQIRQHCSPTGDGMQRLAKYFADGLEARMAGSGTQIYKALITMPTS---AADVLKAYQLYLAACPFRKISN 443
                     5789************************************************************999999...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     +  N++I  a+e+ +++HiiDf+i +G+QWp+L+q L+sRp+gpp+lRiTg++ p++g   +e++eetg+rLa++Ae+++vpfefn+ +a+++e+
  XP_027110974.1 444 FFSNKMIWHAAEEGSTLHIIDFGILYGFQWPCLIQRLSSRPGGPPKLRITGIDLPHPGfrPAERVEETGRRLANYAETFKVPFEFNA-IAQKWET 537
                     ********************************************************9999***************************.7****** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++e+L+++++E+laVn+ +++ +llde+v ++s+r+ vL+l+++++P+v+v+   +  +n++ F++rf eal +ys++fd+le+++pre +er+
  XP_027110974.1 538 VRIEDLKIREDEVLAVNCLYRMRNLLDETVVVNSPRNIVLNLIRKMKPDVFVLGIVNGAYNAPFFVTRFREALFHYSSFFDMLEVNIPREIHERM 632
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      +E+ ++gre++nv+ace aer+er et+++W+ r  +aGF+++pl+e+++  ak   + +++d + ++e+s++l++gWk+r L+++S+Wr
  XP_027110974.1 633 LLEKTIFGREAMNVIACEAAERVERPETYKQWQVRNLRAGFRQLPLNEDIMRMAKERAKSYDKD-FVIDEDSQWLLQGWKGRILYALSSWR 722
                     **************************************************************77.*************************8 PP

Sequence ? help Back to Top
Protein Sequence    Length: 725 aa     Download sequence    
MVMDGNSRVG YGTTSGIELN NEGVSVVPNP NLIGSLRLDG NVVERNYASR LSVQSHLYPN  60
VFVPLSSGDS NEDYDFSDAV LKYINDILME EEMEDKGCMF QESAALQAAE KSFYDVLGEK  120
YPPPPDHQVP SSNLRVPSRD ESYLGGYDGL IWCPSWNNDA SGSDSTYVQH FSPYSSSNST  180
GTVADGHIDS PDSILRISDI FSDSQSAMQF KKGVEEASKF LPNGNALLVD SHENGLLDKD  240
QKKWPMTVKV ERSENGYSPD ESRGKKNPLH EDLQQLGGRS NKQSAVFTES TVRSDLFDKV  300
LLCSGGRNES DLRKALQDIA VKNVPQNNKL KGSSGGKSRS KKQAAKRNVV DLRTLLTLCA  360
QAVAADDRRT ANEFLKQIRQ HCSPTGDGMQ RLAKYFADGL EARMAGSGTQ IYKALITMPT  420
SAADVLKAYQ LYLAACPFRK ISNFFSNKMI WHAAEEGSTL HIIDFGILYG FQWPCLIQRL  480
SSRPGGPPKL RITGIDLPHP GFRPAERVEE TGRRLANYAE TFKVPFEFNA IAQKWETVRI  540
EDLKIREDEV LAVNCLYRMR NLLDETVVVN SPRNIVLNLI RKMKPDVFVL GIVNGAYNAP  600
FFVTRFREAL FHYSSFFDML EVNIPREIHE RMLLEKTIFG REAMNVIACE AAERVERPET  660
YKQWQVRNLR AGFRQLPLNE DIMRMAKERA KSYDKDFVID EDSQWLLQGW KGRILYALSS  720
WRPAD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0GRAS family protein