PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027110879.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 419aa MW: 45390.9 Da PI: 6.1356

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027110879.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.6	5.1e-17	54	99	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+W++eEd l ++v ++G ++W +Iar ++ gR++k+c++rw + XP_027110879.1 54 RGPWSPEEDAVLTRLVSKFGARNWGLIARGIP-GRSGKSCRLRWCNQ 99 89****************************.*********985 PP
2	Myb_DNA-binding	55.3	1.6e-17	106	150	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T eEd++++ a++ +G++ W++Ia+ + gRt++ +k++w++ XP_027110879.1 106 RKPFTDEEDQIIISAHAIHGNK-WASIAKLLS-GRTDNAIKNHWNST 150 789*****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence
MTSAPEENGL KINSAVVDVD QAVVVDGCGD AMEGTTDDAG GGASGSGGRS GRVRGPWSPE 60 EDAVLTRLVS KFGARNWGLI ARGIPGRSGK SCRLRWCNQL DPGVKRKPFT DEEDQIIISA 120 HAIHGNKWAS IAKLLSGRTD NAIKNHWNST LKRRFSSMSQ NEMIQDGSID TLVASSGETM 180 SPGLINSLNS PKEEYISPVE EIPRQTEGKD PTNGDQFYSD NCQCNVSERN QHCIGEKNSS 240 NIHRPVARIG AFNIYNPSGS DYALPRTTPM QGPLIRASTP DFGFFTYMEG ELDEPVIPLQ 300 CSHGCCRSSG LGSSLKKSSL LGPEFVEYEE LPPCSGHELA AIATDLNNIA WIKSGLENSL 360 RVPETASGPM VPRTVPVQMN AHEHALQPLH FDKVQHQSRG IMTNVFPAKM PLPTCIFSS

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence

MTSAPEENGL KINSAVVDVD QAVVVDGCGD AMEGTTDDAG GGASGSGGRS GRVRGPWSPE  60
EDAVLTRLVS KFGARNWGLI ARGIPGRSGK SCRLRWCNQL DPGVKRKPFT DEEDQIIISA  120
HAIHGNKWAS IAKLLSGRTD NAIKNHWNST LKRRFSSMSQ NEMIQDGSID TLVASSGETM  180
SPGLINSLNS PKEEYISPVE EIPRQTEGKD PTNGDQFYSD NCQCNVSERN QHCIGEKNSS  240
NIHRPVARIG AFNIYNPSGS DYALPRTTPM QGPLIRASTP DFGFFTYMEG ELDEPVIPLQ  300
CSHGCCRSSG LGSSLKKSSL LGPEFVEYEE LPPCSGHELA AIATDLNNIA WIKSGLENSL  360
RVPETASGPM VPRTVPVQMN AHEHALQPLH FDKVQHQSRG IMTNVFPAKM PLPTCIFSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55730.1	2e-90	MYB family protein