PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027110847.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB
Protein Properties Length: 278aa    MW: 31289.4 Da    PI: 9.7179
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027110847.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.18.2e-082470347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     +WT+eE +++  a ++   +   +W ++a++++ g++  ++++ +q +
   XP_027110847.1 24 KWTKEENKRFESALAMIDEKspdRWYRVAAMIP-GKSVCDVINQYQEL 70
                     8********************************.***********976 PP
2Myb_DNA-binding39.71.1e-12122166347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + + +G+g+W+ I+r +   +t+ q+ s+ qky
   XP_027110847.1 122 PWTEEEHRRFLMGLQAHGKGDWRNISRNFVISKTPTQVASHAQKY 166
                      7*****************************789***********9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    
METLYPASYI VNSDLLLKEL KSTKWTKEEN KRFESALAMI DEKSPDRWYR VAAMIPGKSV  60
CDVINQYQEL VADVNDIEAG LVPVPGYLAS SFTLELMDNR GGFATFRKRG RSIDQERKKG  120
IPWTEEEHRR FLMGLQAHGK GDWRNISRNF VISKTPTQVA SHAQKYFLRQ LSGGKDKKRP  180
SIHDITTVQL PNKTPSEDNK SPSPDKSGLS PVQKSTNASK MLFDWNNSND GVLMVFDSLD  240
PNESIGSLFD IATQGRYAAG IRSANSKFHI QPTKYVLG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107119RKRGRSIDQERKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.13e-88MYB family protein