PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027110784.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C3H

Protein Properties

Length: 679aa MW: 73416.8 Da PI: 7.5634

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027110784.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.2	1.2e-07	268	288	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f + GtC Gd C +aHg XP_027110784.1 268 PCPDFKK-GTCAKGDACEYAHG 288 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 679 aa Download sequence
MCFGSKSKPC PSDMDMDGKF QAKRGGVVGQ NCSKLLELSA TDDLAGFISE VEEKGCDVNE 60 LSFWYGRTIG TKKMGFEERT PILIASMYGS TKVLKYIVQS GKVDVNRAYG SDGVTALHCA 120 AAGGSDSSVE SVKLLLDASA DVNSLDAKGN RSGDLIVPFV KSLSNSKRKA MEMLLKGIAS 180 EAVDVGEEQG NARAQSKEGV EKKEYPIDVS LPDINIGIYG SDEFRMYSFK VKPCSRAYSH 240 DWTECPFVHP GENARRRDPR KYHYSCVPCP DFKKGTCAKG DACEYAHGVF ESWLHPAQYR 300 TRLCKDETGC SRKVCFFAHK PEELRPLYAS TGSAMPSPKS VAVTSMDMAT LSPLTLGSSS 360 MLMPTTSTPP MSPSTACSSP LGTSMWQNKM NLTPPTLQLP GSRLKTALNA RDLDLELELL 420 GLESIRTQQQ QRQQLIDEMA GLASPSHWNN NRIGDLKPTN LDDVFGSLDP SFLSHLQCLS 480 PKVPASSSSQ LQSPTGIQMR QNMNQLRGSY PANVSSSPAR KSSTLGFDSS AAVAAAVMNS 540 RSAAFAKRSQ SFIDRGAGSQ RAGLSSFSNS QNMMASKVSD WGSPDGKLDW GFNGDDINKL 600 RKSASFGFRN GNAAAAAAAT KGMSPSVDEP DVSWVNSLVK DVPSTNAGLY SSEQKHGGFN 660 DILPSWIDQL YIEQEQMVA

Sequence ? help Back to Top

Protein Sequence Length: 679 aa Download sequence

MCFGSKSKPC PSDMDMDGKF QAKRGGVVGQ NCSKLLELSA TDDLAGFISE VEEKGCDVNE  60
LSFWYGRTIG TKKMGFEERT PILIASMYGS TKVLKYIVQS GKVDVNRAYG SDGVTALHCA  120
AAGGSDSSVE SVKLLLDASA DVNSLDAKGN RSGDLIVPFV KSLSNSKRKA MEMLLKGIAS  180
EAVDVGEEQG NARAQSKEGV EKKEYPIDVS LPDINIGIYG SDEFRMYSFK VKPCSRAYSH  240
DWTECPFVHP GENARRRDPR KYHYSCVPCP DFKKGTCAKG DACEYAHGVF ESWLHPAQYR  300
TRLCKDETGC SRKVCFFAHK PEELRPLYAS TGSAMPSPKS VAVTSMDMAT LSPLTLGSSS  360
MLMPTTSTPP MSPSTACSSP LGTSMWQNKM NLTPPTLQLP GSRLKTALNA RDLDLELELL  420
GLESIRTQQQ QRQQLIDEMA GLASPSHWNN NRIGDLKPTN LDDVFGSLDP SFLSHLQCLS  480
PKVPASSSSQ LQSPTGIQMR QNMNQLRGSY PANVSSSPAR KSSTLGFDSS AAVAAAVMNS  540
RSAAFAKRSQ SFIDRGAGSQ RAGLSSFSNS QNMMASKVSD WGSPDGKLDW GFNGDDINKL  600
RKSASFGFRN GNAAAAAAAT KGMSPSVDEP DVSWVNSLVK DVPSTNAGLY SSEQKHGGFN  660
DILPSWIDQL YIEQEQMVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40140.2	0.0	C3H family protein