PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027110404.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family C3H
Protein Properties Length: 444aa    MW: 48607.8 Da    PI: 7.8423
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027110404.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.84.5e-09120142326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     ++lC+f+ + G C+yGd+C++ H+
  XP_027110404.1 120 EKLCNFWVQ-GNCSYGDKCRYLHS 142
                     579******.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    
MDVDGSKRIF QRLGPGASTA SSSGSDTNNK QQKVCYHWRA GKCSRFPCPY LHRELPPPQQ  60
SSMGNGAATS KRPYGFSADD NYAGGGMRRN PNFNNSWGRQ QQQHQQGYGN RGGGVIKKTE  120
KLCNFWVQGN CSYGDKCRYL HSWSTGNCFS LLTQLEGHEK VVTGIALPSG SDRLYTGSKD  180
ETVRVWDCQS GQCAGVISLG GEIGCMRSEG PWVFVGLTNF VRAWNTQTTT DLSLSGPVGQ  240
VYALVVGNDL LFAGVQDGTI LAWKFNTATN SFEPAASLKG HNLAVVTLVV GANKLYSGSM  300
DHSIRVWSLE TLQCLQTLTD HSNVVMSVLC WDQFLLSCSL DKTVKVWAAT ELGSLEVTYT  360
HNEEHGLLTL CGMHDLDGKP VLLCSCNDNC IRVYDLPSFC ERGKIFAKQE VRSIQTGPPG  420
LFFTGDGTGQ VKVWQWSTES TLTK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.10.0C3H family protein