PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027110249.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 713aa    MW: 77610.8 Da    PI: 7.6688
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027110249.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS341.71.3e-1043447133374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     + + ++A a+s+g +e+a+++L+rl + a+p+g++ qRl+ay+t AL++r++       +   p + +e  ++e+  ++++++evsP++k+++ +
  XP_027110249.1 344 QSIADVAVAISEGRMEAATEVLTRLAQVANPRGTSEQRLTAYMTSALRSRVNP-----TD-Y-PPPVTELYTAEHSDSTQMLYEVSPCFKLGFTA 431
                     567889**********************************************9.....22.2.2222334588999999**************** PP

            GRAS  98 aNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvlvakrle 187
                     aN aI ea++ge   +++H+iDfdi+qG+Q+  Ll+ La+ + ++p  l+iT+++++ ++  +e+l++++ +L+ +A++lgv ++ +v ++ r+ 
  XP_027110249.1 432 ANLAIQEAISGEqpaDKLHVIDFDIGQGGQYEHLLHLLATMKaDKPSVLKITTLVDSVNNgGEERLRAVRGNLEALANKLGVCLSLRV-TSLRIG 525
                     ************9999***********************665267779*****99987778**************************9.999*** PP

            GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                     +l+ e+L v+++EalaVn++++l+rl+desv++e+ rde+L+ vk lsPkvv++veqe+  n+++F++r+ ea+ yy  l+dsl+a+++r+  +r
  XP_027110249.1 526 ELNREKLGVESDEALAVNFAFRLYRLPDESVTTENLRDELLRRVKWLSPKVVTLVEQEMGGNTAPFVTRVKEACAYYGLLLDSLDATVGRDCPDR 620
                     *********************************************************************************************** PP

            GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     + +E+  +gr++ n vaceg++r+er+e ++kWr+r+++aGF+  p+s+++ ++ ++ l+ v   s+gy+v+e+sg +++gW++r+L+++SaWr
  XP_027110249.1 621 VRIEEG-VGRKLANSVACEGRDRVERCEVFGKWRARMSMAGFELKPMSQTVGDSLRSKLHSVTrgSQGYTVNEQSGGVCFGWMGRTLTVASAWR 713
                     ******.*****************************************************9988899**************************8 PP

Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    
MSSGFSGGGG PDFFTSSGIA TGRSTNPMMP TMNMNMNMNV TNPSQLPYRS ALAGILPDPA  60
AQIVHRGPDL IGKRSLTEFQ QQHQLLQQQQ QQQQHQQQMG GLGPLYSNLR NVKPRVNYQH  120
ASPISPLSPV DLSVISSLSP EASSISNSSS PMNPRYGRPI LQQFRPQQQQ QQQLQQPQPQ  180
PPRMMSNCGL TTTASLSNGN IIQPASSGGM PNRPNKFIPS NISSSSSVSF PNLFHNQRAV  240
VPMPMSVGMV TPGKQLFSAP QDQTENKMMN KLQELEKQLF DDDDEGGCGG DAVSVVTNSE  300
WSDTIHSLNM ITTTNCKAIS PSPTSSSSSC SSTSASPPIA CPKQSIADVA VAISEGRMEA  360
ATEVLTRLAQ VANPRGTSEQ RLTAYMTSAL RSRVNPTDYP PPVTELYTAE HSDSTQMLYE  420
VSPCFKLGFT AANLAIQEAI SGEQPADKLH VIDFDIGQGG QYEHLLHLLA TMKADKPSVL  480
KITTLVDSVN NGGEERLRAV RGNLEALANK LGVCLSLRVT SLRIGELNRE KLGVESDEAL  540
AVNFAFRLYR LPDESVTTEN LRDELLRRVK WLSPKVVTLV EQEMGGNTAP FVTRVKEACA  600
YYGLLLDSLD ATVGRDCPDR VRIEEGVGRK LANSVACEGR DRVERCEVFG KWRARMSMAG  660
FELKPMSQTV GDSLRSKLHS VTRGSQGYTV NEQSGGVCFG WMGRTLTVAS AWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-144GRAS family protein