PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027110249.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | GRAS | ||||||||
Protein Properties | Length: 713aa MW: 77610.8 Da PI: 7.6688 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 341.7 | 1.3e-104 | 344 | 713 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 + + ++A a+s+g +e+a+++L+rl + a+p+g++ qRl+ay+t AL++r++ + p + +e ++e+ ++++++evsP++k+++ + XP_027110249.1 344 QSIADVAVAISEGRMEAATEVLTRLAQVANPRGTSEQRLTAYMTSALRSRVNP-----TD-Y-PPPVTELYTAEHSDSTQMLYEVSPCFKLGFTA 431 567889**********************************************9.....22.2.2222334588999999**************** PP GRAS 98 aNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvlvakrle 187 aN aI ea++ge +++H+iDfdi+qG+Q+ Ll+ La+ + ++p l+iT+++++ ++ +e+l++++ +L+ +A++lgv ++ +v ++ r+ XP_027110249.1 432 ANLAIQEAISGEqpaDKLHVIDFDIGQGGQYEHLLHLLATMKaDKPSVLKITTLVDSVNNgGEERLRAVRGNLEALANKLGVCLSLRV-TSLRIG 525 ************9999***********************665267779*****99987778**************************9.999*** PP GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282 +l+ e+L v+++EalaVn++++l+rl+desv++e+ rde+L+ vk lsPkvv++veqe+ n+++F++r+ ea+ yy l+dsl+a+++r+ +r XP_027110249.1 526 ELNREKLGVESDEALAVNFAFRLYRLPDESVTTENLRDELLRRVKWLSPKVVTLVEQEMGGNTAPFVTRVKEACAYYGLLLDSLDATVGRDCPDR 620 *********************************************************************************************** PP GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374 + +E+ +gr++ n vaceg++r+er+e ++kWr+r+++aGF+ p+s+++ ++ ++ l+ v s+gy+v+e+sg +++gW++r+L+++SaWr XP_027110249.1 621 VRIEEG-VGRKLANSVACEGRDRVERCEVFGKWRARMSMAGFELKPMSQTVGDSLRSKLHSVTrgSQGYTVNEQSGGVCFGWMGRTLTVASAWR 713 ******.*****************************************************9988899**************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 713 aa Download sequence |
MSSGFSGGGG PDFFTSSGIA TGRSTNPMMP TMNMNMNMNV TNPSQLPYRS ALAGILPDPA 60 AQIVHRGPDL IGKRSLTEFQ QQHQLLQQQQ QQQQHQQQMG GLGPLYSNLR NVKPRVNYQH 120 ASPISPLSPV DLSVISSLSP EASSISNSSS PMNPRYGRPI LQQFRPQQQQ QQQLQQPQPQ 180 PPRMMSNCGL TTTASLSNGN IIQPASSGGM PNRPNKFIPS NISSSSSVSF PNLFHNQRAV 240 VPMPMSVGMV TPGKQLFSAP QDQTENKMMN KLQELEKQLF DDDDEGGCGG DAVSVVTNSE 300 WSDTIHSLNM ITTTNCKAIS PSPTSSSSSC SSTSASPPIA CPKQSIADVA VAISEGRMEA 360 ATEVLTRLAQ VANPRGTSEQ RLTAYMTSAL RSRVNPTDYP PPVTELYTAE HSDSTQMLYE 420 VSPCFKLGFT AANLAIQEAI SGEQPADKLH VIDFDIGQGG QYEHLLHLLA TMKADKPSVL 480 KITTLVDSVN NGGEERLRAV RGNLEALANK LGVCLSLRVT SLRIGELNRE KLGVESDEAL 540 AVNFAFRLYR LPDESVTTEN LRDELLRRVK WLSPKVVTLV EQEMGGNTAP FVTRVKEACA 600 YYGLLLDSLD ATVGRDCPDR VRIEEGVGRK LANSVACEGR DRVERCEVFG KWRARMSMAG 660 FELKPMSQTV GDSLRSKLHS VTRGSQGYTV NEQSGGVCFG WMGRTLTVAS AWR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52510.1 | 1e-144 | GRAS family protein |