PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027109704.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 340aa MW: 37950 Da PI: 5.0437

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027109704.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.4	4.6e-12	164	209	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +Er+RR+++ ++f L +l+P + kK++K ++L A+ Y+k+Lq XP_027109704.1 164 HIVAERKRREQLSQRFVALSTLVPGL-----KKMDKTSVLGDAISYLKHLQ 209 8899********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence
MDNPVSSWFS ELGMEDSFFN DQYDVMDFLD EEFLNANLSP EGNTYSSTFI PISTCSTTLS 60 ALSAMDAPPI SAERPAKQQK SDDLNSSSLG NIPNHHNQPM ILTFGNPVMP AEINPQQINL 120 EDDAVSEILK SHGSFVNLEE ATRSSQKRKK TGGRTRPASQ TYDHIVAERK RREQLSQRFV 180 ALSTLVPGLK KMDKTSVLGD AISYLKHLQE RVKTLEEQAA KQNMESMVLV KRSQLLVEDE 240 GSSDEMGGSD EQPLPEIEAK LCNKNILLRV HCRNHRGVLV KILSEVEMLN LTVIHTSVAP 300 FGRLALDITL MAEMEKEFNL TMQELVKSIQ SALQRGKQGD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	168	173	ERKRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	1e-56	bHLH family protein