PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027109622.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | LBD | ||||||||
Protein Properties | Length: 219aa MW: 24500.6 Da PI: 4.0256 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 118.5 | 4e-37 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrr+C+ +Cv+apyf eq +++f++vh++FGasnv+kll +lp ++r +a+ ++ yeA ar++dP+yG+v++i++l+qq+++lk+e+ XP_027109622.1 7 SCGACKFLRRRCTIECVFAPYFGYEQaASHFEAVHRVFGASNVSKLLLNLPVQNRAEAAITISYEALARMQDPIYGCVAHIFALEQQVACLKEEI 101 6***********************9978******************************************************************* PP DUF260 95 allkee 100 ++++++ XP_027109622.1 102 EMIETQ 107 998876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence |
MTGMGSSCGA CKFLRRRCTI ECVFAPYFGY EQAASHFEAV HRVFGASNVS KLLLNLPVQN 60 RAEAAITISY EALARMQDPI YGCVAHIFAL EQQVACLKEE IEMIETQMAS LAVDVTSSCE 120 SYNVADYSNP EIAFGCDQYM NLANFINQQQ MELDPITYTE VKACDDSQMM VQFPPGNGWE 180 DAISQLSSSN SNLSEPLFQE FTQSIYEQCL WPEYCSTLN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06080.1 | 2e-56 | LBD family protein |