PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027109555.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 301aa    MW: 33171.4 Da    PI: 4.5226
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027109555.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.91.8e-08180224655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++ r+RR++i ++ +eL +l+P       +K++ ae+ + A +YIk Lq
  XP_027109555.1 180 SIAARQRRRKITEKTQELGKLIPGG-----QKMNTAEMFQAASKYIKFLQ 224
                     6788*******************86.....7******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    
MALSCYSNWG ELEQHHDSEM TLQFAQPPAA ELSPELLGFN HMNFAFSDPY LDPILESQDL  60
VYSDNYTSLL PHFSSPSDEN SNSLYSLVPE VFPELEYQPC HSAKRQKIFE GCYNNSEVLP  120
SSFGSRFIPN PPLLQELSPP EILSPFSGSL ASKPPVFCSG STGEMTVKKA SNGGTLSSQS  180
IAARQRRRKI TEKTQELGKL IPGGQKMNTA EMFQAASKYI KFLQAQVGIL ETLASVQENG  240
KSLQNEELNP LLGSSLIQEK LYSMEMCLAP QKFVQSLAED NGVELNTQAL NDCKELIGIG  300
C
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.11e-26bHLH family protein