PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027109524.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 205aa    MW: 22989.8 Da    PI: 5.1085
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027109524.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.53.8e-06177202530
                     HHHHHHHHHHHHHHHHHHHHCTSCCC CS
             HLH   5 hnerErrRRdriNsafeeLrellPka 30 
                     h  +Er+RR++i ++f  L  l+P +
  XP_027109524.1 177 HIVAERKRREQISQRFVALSALVPGL 202
                     8899********************75 PP
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    
MDDPHFDEQC DIMDFFDEEL SAALGEDLQN TLSQEDNTYS SQEVPFPHWG FPEINLKNTY  60
SSTLIPRNSS ATNLSALSAM EAPLVSTEIP TKQQNSKSST SSINLNQPFC SPMILTFGNC  120
QEVTLGSFSP EGDTMSEVLL SQESHMNLKD AIIKDTQKKK KKKTARRVRP ASQTYDHIVA  180
ERKRREQISQ RFVALSALVP GLKKE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181186ERKRRE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.15e-12bHLH family protein