PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027109508.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family NF-YC
Protein Properties Length: 172aa    MW: 19196.4 Da    PI: 10.4333
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027109508.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC56.85.1e-1888142151
           NF-YC   1 qlksfwekq...iekatdfk.nhelPlarikkilkadedvkmisaeaPvllskac 51 
                     ql+sfw++q   ie+ + +k +++lP ar+kki+ka ed +m+saeaP++++kac
  XP_027109508.1  88 QLQSFWANQrqeIERLAGIKsHNSLPYARMKKIMKAAEDATMVSAEAPIVFAKAC 142
                     89*****99888999999995668******************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    
MLMLEVTQDI LKDPSVVSTK DKFYLVPQFS GIVGGMPQLS YAPNLYDGNP GQGSLVTSVG  60
NRPARLVLKQ QGVQLGEKQQ QQSELEQQLQ SFWANQRQEI ERLAGIKSHN SLPYARMKKI  120
MKAAEDATMV SAEAPIVFAK ACVWEPGIKL RKPKERRFKR MILLAAAVAR AQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.16e-18NF-YC family protein