PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027109326.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 751aa    MW: 84356.3 Da    PI: 5.3855
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027109326.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS355.11.1e-1083757461374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l+ lL++cA+av+s d +  ++lLar+++++s +gd m+Rla+yf+ AL+arla+++++ly   + ++ s    ++ l+ +++f+ + P+ k+s+
  XP_027109326.1 375 LRALLVQCAQAVASFDIRTSNELLARIRQHSSAHGDGMERLAHYFAIALEARLAGTGTTLYTDYRKRRIS---AADILNGYQMFVSAIPFKKVSN 466
                     5789*********************************************************999888888...99******************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     + aN+ I + ++g++r+HiiDf+i +G+QWp+L+q L+ Rpegpp l iTg++ p++g   +e++eetg rLa+++e++gvpfef++ +ak++++
  XP_027109326.1 467 IFANKNIGKLAAGATRLHIIDFGILYGFQWPCLIQRLSVRPEGPPALCITGIDLPQPGlrPAERVEETGLRLARYCERFGVPFEFHP-IAKKWDT 560
                     ***************************************************************************************.7****** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     ++le+L+++ +E+l+Vn++ +l +++de+v  +s+rd+vL+l+k+++P++++ +  +  +ns+ F++rf eal ++s++fd++ea++ re+++r+
  XP_027109326.1 561 IKLEDLKINGDEVLVVNCMERLANVPDETVVENSPRDAVLNLIKRIRPNMFIQSVINGTYNSPFFVTRFREALFHFSSVFDMFEATVLRENQDRA 655
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                       Ere+ +r++ nv+aceg+er+er et+++W+ r  +aGF+++pl+++++k ++  ++ ++ + ++v+e+ +++++gWk+r   ++S+W+
  XP_027109326.1 656 LFEREIYARDALNVIACEGTERVERPETYKQWQVRNLRAGFRQLPLDQEIVKIIRDRVKSHYHRDFSVDEDGKWMLQGWKGRVSQAISCWE 746
                     **************************************************************999*************************5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 751 aa     Download sequence    
MDGTLVEPFP FSGNMYDLNY RSMSAHHEQN EVDEYKFDRG SEDFSDASNG SPPPDASSPS  60
GSDGNPPVQG DSNDPMLKFI NEMLMEEDDL TNKPCMFHDC SALLAAEKSF YDVLNEPKSG  120
PSFFSCYQNA ESPNDDSSQS CYSQSSVCSS SDVNPSVESN WVGNQMGLES AVIQPSHVNL  180
VPQSILLSNQ QLLSSTNDFL DAAHRLDESW MSLLRMSDSS SQRPLDLKAW GSKGDVYGLL  240
PQGDSFSNST FESQNNTSNA AAVVEKSVRY HSSNGPSSKK NHGRDDSDDA EEHRSNKQLA  300
SSADESVPLE RYDNVLLCPN LNPHLQPEPV FSSSEKALKD EARNKLQQTE RSKASTRGRP  360
RGGKKQGTKR EVVDLRALLV QCAQAVASFD IRTSNELLAR IRQHSSAHGD GMERLAHYFA  420
IALEARLAGT GTTLYTDYRK RRISAADILN GYQMFVSAIP FKKVSNIFAN KNIGKLAAGA  480
TRLHIIDFGI LYGFQWPCLI QRLSVRPEGP PALCITGIDL PQPGLRPAER VEETGLRLAR  540
YCERFGVPFE FHPIAKKWDT IKLEDLKING DEVLVVNCME RLANVPDETV VENSPRDAVL  600
NLIKRIRPNM FIQSVINGTY NSPFFVTRFR EALFHFSSVF DMFEATVLRE NQDRALFERE  660
IYARDALNVI ACEGTERVER PETYKQWQVR NLRAGFRQLP LDQEIVKIIR DRVKSHYHRD  720
FSVDEDGKWM LQGWKGRVSQ AISCWEPVDE Q
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-175GRAS family protein