PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027109313.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 602aa MW: 69693.9 Da PI: 8.1694

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027109313.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	43.4	1.1e-13	55	139	1	85
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fY ++k+vGF +r + +kk ++g +t +++vC++eg+r+++ + +++++ + tr+gC a++ v+ +kd + v+ +leH XP_027109313.1 55 EFYLCHSKMVGFGIRERDEKKD-QKGIVTYKRWVCNREGFRNSKWLNlVDRKKEAKRLTRVGCLATIIVQWNKDIQKSVNPADLEH 139 69************999888.7777************99986778888999**************9999999999999 PP

Sequence ? help Back to Top
Protein Sequence Length: 602 aa Download sequence
MEEMTVHINE LVQLSNKSAK LGGGISWRTI VDRLDKLSSD EIQLLTFDSI EDAREFYLCH 60 SKMVGFGIRE RDEKKDQKGI VTYKRWVCNR EGFRNSKWLN LVDRKKEAKR LTRVGCLATI 120 IVQWNKDIQK SVNPADLEHD ILMHRVGIRI PQIVDLQAYQ AGGHNKMGYT EKDLRNAVDQ 180 FHRNAVEVGD ASQVLAYLDG RANGEPNFFY KYAVDVEKRL IRLFWTDSQS RLDYQYFGDV 240 LVFDSTYRTN AYRKPLVILA GVNHHYVTTI FGCALIVDET EDTYKWVLET FLEAMEKKAP 300 ISVVTDRDGA MRNAIKAVIP YARHRLCAWH LKRNVVTNTN KGFVLDFGVA MDMICSHEEF 360 ERRWHLLVEK HNLRENQWVV DLYNKREKWA AAFLRGHFFA VRQNEHKEEC ITSQSSPVLI 420 THLRELEGNA ANIFMRKIFL KVRDEISAEA SLRLVSIVDQ DKVKLYTFTE YLHQICSWQV 480 ELDKAERSII CSCKKLESDG IPCSNAFAVM KNEDMGEIPK SCILFRWTQQ AKPNEKNIYS 540 IQLEDSAIQA ARFGALCALS NQMCFYAVKT KQGYDEAREC IINSASRFKN LWVNDAPLVH 600 KV

Sequence ? help Back to Top

Protein Sequence Length: 602 aa Download sequence

MEEMTVHINE LVQLSNKSAK LGGGISWRTI VDRLDKLSSD EIQLLTFDSI EDAREFYLCH  60
SKMVGFGIRE RDEKKDQKGI VTYKRWVCNR EGFRNSKWLN LVDRKKEAKR LTRVGCLATI  120
IVQWNKDIQK SVNPADLEHD ILMHRVGIRI PQIVDLQAYQ AGGHNKMGYT EKDLRNAVDQ  180
FHRNAVEVGD ASQVLAYLDG RANGEPNFFY KYAVDVEKRL IRLFWTDSQS RLDYQYFGDV  240
LVFDSTYRTN AYRKPLVILA GVNHHYVTTI FGCALIVDET EDTYKWVLET FLEAMEKKAP  300
ISVVTDRDGA MRNAIKAVIP YARHRLCAWH LKRNVVTNTN KGFVLDFGVA MDMICSHEEF  360
ERRWHLLVEK HNLRENQWVV DLYNKREKWA AAFLRGHFFA VRQNEHKEEC ITSQSSPVLI  420
THLRELEGNA ANIFMRKIFL KVRDEISAEA SLRLVSIVDQ DKVKLYTFTE YLHQICSWQV  480
ELDKAERSII CSCKKLESDG IPCSNAFAVM KNEDMGEIPK SCILFRWTQQ AKPNEKNIYS  540
IQLEDSAIQA ARFGALCALS NQMCFYAVKT KQGYDEAREC IINSASRFKN LWVNDAPLVH  600
KV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-80	FAR1 family protein