PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027109187.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | FAR1 | ||||||||
Protein Properties | Length: 565aa MW: 65800.4 Da PI: 8.21 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 74.2 | 2.7e-23 | 26 | 113 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 kfYn+YA ++GFsvrk++ +k ++g +t++++ C keg +++ + + + +rtra t+tgC ak+++ + + + k++v++l+leHnHel XP_027109187.1 26 KFYNKYAFKMGFSVRKDYLNKD-KDGMTTSKRYSCCKEGVKHKYEGD-VMPKRTRAPTKTGCGAKMVIVLFRgTMKYRVHDLVLEHNHEL 113 6******************998.8888****************9999.999*******************999****************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 565 aa Download sequence |
MDCSKLAENE TPELGMEFNS EEDAYKFYNK YAFKMGFSVR KDYLNKDKDG MTTSKRYSCC 60 KEGVKHKYEG DVMPKRTRAP TKTGCGAKMV IVLFRGTMKY RVHDLVLEHN HELHIAQCAH 120 MMLSQRKVSV AQGFQAEISK DAGLSLKQSH ELMGKEAGGM GNVGYTRDDL KRYLRTRRER 180 SLKYGEAGSM LNYFQEQTLE NPSFFHAVQL DCEEQITNIF WADAGMLIDY NFFGNVVTFD 240 TTYKTNKEYR PLGVFVGFNQ HRQIVIFGAA LMYDETIDSF KWVFGTFLEA MCGKHPSTIL 300 TDQDHAMATA LSIVTPETFH GLCTFHIRRN FMKHLGNHYK ENSDLPYMFS ACMYKFEEVE 360 QFNRVWEAMV KKHNLENNEW LSGLYRIRDK WARCMMKERW TAGMRSTQFS ESLNAVIKNH 420 LKLDHDLVQF FRHFNRVVDE KRHNELIAEY EMRQKFHMVG LRQTHMLVHA SKTYSPTVFV 480 AFQNEYGEST AMVILRQQDA AMFVEFAVMR YDGGPERTVV FNQNDLSVCC SCKKYENESI 540 LCGHALKVFD TVGIKIIPPE YIKRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 6e-98 | FAR1 family protein |