PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027108968.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 490aa MW: 54639.2 Da PI: 6.3386

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027108968.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.6	9.6e-13	292	338	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h Er+RR +iN++++ Lr+l+P++ K++ a+++ A+ YI++L XP_027108968.1 292 RKHFTTERQRRVQINDKYQALRSLVPNP-----SKNDRASVVGDAIGYINEL 338 67***********************9.....7*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence
MLVESACFDP HPMQGGGLVG DGFSQTHVPN CSPSFSMEDH PYHQRNASQP QQQVVSAAAS 60 AAGMEMELQQ QLNIDMEHTN LQDMVHESNR NQILSSCDPS NWEDVNFIYH HQQLQDHHHQ 120 HHQHMQQVDM QNIQHHHFSM PLPDTPYPPT PDLLNMLPLP RCSPSALLVP NTSISFANSS 180 AQKPSNFLSS LGLLGDLSGT DGVTTPSPVV YDPLLPVNLP PQPPLLRELI HSFPHGYNLG 240 GSRNDSLFTG VDDREASGCL FQDGDGRSYE NGVFEFTADV KCLGKGRDGK GRKHFTTERQ 300 RRVQINDKYQ ALRSLVPNPS KNDRASVVGD AIGYINELKR TVAELKILVE KKRCSRDRIK 360 RHKVEDGAEG AAVKTEDDLD QPYDGSSLRS SWLHRKSKST EVDVRIIDDE VTVKLVQQKR 420 INCLLFVSKV LDELQLDLHH VAGGLIGDYY SFLFNSKISE GSTVYAHAIA NKLIEVVDKQ 480 YAAVQPTSSY

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence

MLVESACFDP HPMQGGGLVG DGFSQTHVPN CSPSFSMEDH PYHQRNASQP QQQVVSAAAS  60
AAGMEMELQQ QLNIDMEHTN LQDMVHESNR NQILSSCDPS NWEDVNFIYH HQQLQDHHHQ  120
HHQHMQQVDM QNIQHHHFSM PLPDTPYPPT PDLLNMLPLP RCSPSALLVP NTSISFANSS  180
AQKPSNFLSS LGLLGDLSGT DGVTTPSPVV YDPLLPVNLP PQPPLLRELI HSFPHGYNLG  240
GSRNDSLFTG VDDREASGCL FQDGDGRSYE NGVFEFTADV KCLGKGRDGK GRKHFTTERQ  300
RRVQINDKYQ ALRSLVPNPS KNDRASVVGD AIGYINELKR TVAELKILVE KKRCSRDRIK  360
RHKVEDGAEG AAVKTEDDLD QPYDGSSLRS SWLHRKSKST EVDVRIIDDE VTVKLVQQKR  420
INCLLFVSKV LDELQLDLHH VAGGLIGDYY SFLFNSKISE GSTVYAHAIA NKLIEVVDKQ  480
YAAVQPTSSY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31210.1	7e-81	bHLH family protein