PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027108830.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

HSF

Protein Properties

Length: 385aa MW: 44383.9 Da PI: 7.7401

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027108830.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	26.9	1.3e-08	43	80	2	39
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHH CS HSF_DNA-bind 2 Flkklyeiledeelkeliswsengnsfvvldeeefakk 39 Fl+k+++++ed e++++isw+++g+s++vld+ +fa + XP_027108830.1 43 FLMKTFQMVEDTETNNMISWNSEGTSLIVLDHLKFAAE 80 9********************************99875 PP

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence
MEVRGGEIAG NGGIVRPSSL PFKQASEKME FMKGVRGFTP PPFLMKTFQM VEDTETNNMI 60 SWNSEGTSLI VLDHLKFAAE GFRKIGLRQY EYENKWFQRG QEHLLMNIRR RNDEDPTIRK 120 RRGPREQYIT ATRPSMEAEL KIFEDHMNAL KEDITRSKYH MGKLESSIAT FKKNVKIMEA 180 KSKVLIKVLA KIFSPALVEK IIQRVEEEPE LEILQTMKRR RVILPQSSKT ITKSTDDGAC 240 GMDQDDQEAN TSMAELKKIA DQKLWKKFMR DDSVSEDESE QQLLKQHSRI DMGFDDLMVS 300 KIVNANEPNL DVEDEVVVDL WTVSFGAASR KGEKAAARRV DAAEFSASFG YFYLQGVHLI 360 FQRWVSSTYY YWMMSKLDAA NLMQL

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence

MEVRGGEIAG NGGIVRPSSL PFKQASEKME FMKGVRGFTP PPFLMKTFQM VEDTETNNMI  60
SWNSEGTSLI VLDHLKFAAE GFRKIGLRQY EYENKWFQRG QEHLLMNIRR RNDEDPTIRK  120
RRGPREQYIT ATRPSMEAEL KIFEDHMNAL KEDITRSKYH MGKLESSIAT FKKNVKIMEA  180
KSKVLIKVLA KIFSPALVEK IIQRVEEEPE LEILQTMKRR RVILPQSSKT ITKSTDDGAC  240
GMDQDDQEAN TSMAELKKIA DQKLWKKFMR DDSVSEDESE QQLLKQHSRI DMGFDDLMVS  300
KIVNANEPNL DVEDEVVVDL WTVSFGAASR KGEKAAARRV DAAEFSASFG YFYLQGVHLI  360
FQRWVSSTYY YWMMSKLDAA NLMQL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	218	222	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22830.1	3e-21	HSF family protein