PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027108768.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

TCP

Protein Properties

Length: 348aa MW: 38430.5 Da PI: 7.5328

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027108768.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	102.2	8.7e-32	33	140	2	74
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............................... 65 +g+kdrhsk+ T++g+RdRRvRls ++a++f+d+qd+LG+d++sk+i+WL+++ak+ai++l + XP_027108768.1 33 TGRKDRHSKVGTARGPRDRRVRLSPNTAIEFYDVQDRLGYDRPSKAIDWLMKEAKAAIDALEHDfsyatttnldgcsilmqprnplpekgldvqe 127 79**************************************************************9888888888887777776666666665544 PP TCP 66 .....ssssasec.e 74 +s+ s+c XP_027108768.1 128 esrinCSE--SACrI 140 33322111..22332 PP

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence
MQDVSNQGST RLKPKRAKGN SIEMPGGRIF RSTGRKDRHS KVGTARGPRD RRVRLSPNTA 60 IEFYDVQDRL GYDRPSKAID WLMKEAKAAI DALEHDFSYA TTTNLDGCSI LMQPRNPLPE 120 KGLDVQEESR INCSESACRI DSQEYMNNDD TSINNFSFFS MENGVIPPTS SLGFYSYPHG 180 GDLSTSRNNK SQTQGLSPSF HTVQDFSFLF SGGQQGLIPP PSSSSHCQGE INSETARCQR 240 ILAWNSNSSN AKGSQETLVN SELPLHFPSP FDQNQLLFHR EPLQSSFSPI RGPTLDSQFP 300 NLCFSSARFS SDGGLSELSA AARIPGPEKQ KPVSSKPSSP TNLLHYQD

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence

MQDVSNQGST RLKPKRAKGN SIEMPGGRIF RSTGRKDRHS KVGTARGPRD RRVRLSPNTA  60
IEFYDVQDRL GYDRPSKAID WLMKEAKAAI DALEHDFSYA TTTNLDGCSI LMQPRNPLPE  120
KGLDVQEESR INCSESACRI DSQEYMNNDD TSINNFSFFS MENGVIPPTS SLGFYSYPHG  180
GDLSTSRNNK SQTQGLSPSF HTVQDFSFLF SGGQQGLIPP PSSSSHCQGE INSETARCQR  240
ILAWNSNSSN AKGSQETLVN SELPLHFPSP FDQNQLLFHR EPLQSSFSPI RGPTLDSQFP  300
NLCFSSARFS SDGGLSELSA AARIPGPEKQ KPVSSKPSSP TNLLHYQD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31070.1	1e-35	TCP family protein