PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_027108594.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 767aa MW: 83873 Da PI: 6.5556 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.5 | 4.6e-16 | 24 | 68 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE+ ++++a k++G W +I +++g ++t+ q++s+ qk+ XP_027108594.1 24 RERWTEEEHNRFLEALKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 68 78******************88.*********.************98 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 767 aa Download sequence |
MDTYSSGEEL IIKARKPYTI TKQRERWTEE EHNRFLEALK LYGRAWQRIE EHIGTKTAVQ 60 IRSHAQKFFT KLEKEALAKG TPIGQALDIE IPPPRPKRKP CNPYPRKMSI GLPTSQVESK 120 DGKLGNPSSS LPQAEHILDL EKEPAAEKPE GEKFEDAKEN HDEGESNKCF NLLQASPGIS 180 PSSANTCSST MASGKSSVLK EFVPIFNEVV NRDETIESYV TVEAGPNQNS DKFYTIQSFE 240 ENGTCNSRNW ANAHSLNDKP AQNKGNVPEQ SENIDTSPKN GVQSPKSQPR HVAVHILDGS 300 LRMNAPNVSA HMPYEESSFH EIGGVNSNIF STLSSSATSQ HQSSASRFSI SQPFVGFNPI 360 WTPVHQEDYH SFLHASSTFS NLIVSALLQN PTAHAAGSFA ASLWPCSTTE APVESPGGST 420 GGFTARQMNA APSITSIAAA TVAAATAWWT AHGLLPLCAP FHMGLNYVPV SGSAVPAVTN 480 QPRVDITERR EEISGPPLDA KHLEPEFSEA LQEQHSTSKS PTLSLSDSEE SKGLNSSNKS 540 TAKKTDSAAV TDVNDSNKPK GRKRVDRSSC GSNTPSSSEV ETDALEKLEK GKEELREPVV 600 SQPIADSSGR RSRSSSSTSD SWKEVSEEGR LAFQALFSRE VLPQSFSPPH DSKNKGKNTN 660 EKNKDNADEK GDEGYLLDLN GKMCMNSAID QELENNSSLR CLNITEGGLL TTGKLKVRRT 720 GFKPYKRCSV EAKENRLVCA GSQEEEKGTK RIRLEGEASY SLNMQHR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G01060.4 | 3e-50 | MYB_related family protein |