PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027108523.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB_related

Protein Properties

Length: 709aa MW: 77329.4 Da PI: 5.8268

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027108523.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.7	4.2e-16	24	68	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE+ ++++a k++G W +I +++g ++t+ q++s+ qk+ XP_027108523.1 24 RERWTEEEHNRFLEALKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 68 78****************88.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 709 aa Download sequence
MDTYSSGEEL IIKARKPYTI TKQRERWTEE EHNRFLEALK LYGRAWQRIE EHIGTKTAVQ 60 IRSHAQKFFT KLEKEALAKG TPIGQALDIE IPPPRPKRKP CNPYPRKMSI GLPTSQVESK 120 DGKLGNPSSS LPQAEHILDL EKEPAAEKPE GEKFEDAKEN HDEGESNKCF NLLQASPGIS 180 PSSANTCSST MASGKSSVLK EFVPIFNEVV NRDETIESYV TVEAGPNQNS DKFYTIQSFE 240 ENGTCNSRNW ANAHSLNDKP AQNKGNVPEQ SENIDTSPKN GVQSPKSQPR HVAVHILDGS 300 LRMNAPNVSA HMPYEESSFH EIGGVNSNIF STLSSSATSQ HQSSASRFSI SQPFVGFNPI 360 WTPVHQEDYH SFLHASSTFS NLIVSALLQN PTAHAAGSFA ASLWPCSTTE APVESPGGST 420 GGFTARQMNA APSITSIAAA TVAAATAWWT AHGLLPLCAP FHMGLNYVPV SGSAVPAVTN 480 QPRVDITERR EEISGPPLDA KHLEPEFSEA LQEQHSTSKS PTLSLSDSEE SKGLNSSNKS 540 TAKKTDSAAV TDVNDSNKPK GRKRVDRSSC GSNTPSSSEV ETDALEKLEK GKEELREPVV 600 SQPIADSSGR RSRSSSSTSD SWKEVSEEGR LAFQALFSRE VLPQSFSPPH DSKNKGKNTN 660 EKNKDNADEK GDEGYLLDLN GKMCMNSAID QELENNSSLR CLNITEGDY

Sequence ? help Back to Top

Protein Sequence Length: 709 aa Download sequence

MDTYSSGEEL IIKARKPYTI TKQRERWTEE EHNRFLEALK LYGRAWQRIE EHIGTKTAVQ  60
IRSHAQKFFT KLEKEALAKG TPIGQALDIE IPPPRPKRKP CNPYPRKMSI GLPTSQVESK  120
DGKLGNPSSS LPQAEHILDL EKEPAAEKPE GEKFEDAKEN HDEGESNKCF NLLQASPGIS  180
PSSANTCSST MASGKSSVLK EFVPIFNEVV NRDETIESYV TVEAGPNQNS DKFYTIQSFE  240
ENGTCNSRNW ANAHSLNDKP AQNKGNVPEQ SENIDTSPKN GVQSPKSQPR HVAVHILDGS  300
LRMNAPNVSA HMPYEESSFH EIGGVNSNIF STLSSSATSQ HQSSASRFSI SQPFVGFNPI  360
WTPVHQEDYH SFLHASSTFS NLIVSALLQN PTAHAAGSFA ASLWPCSTTE APVESPGGST  420
GGFTARQMNA APSITSIAAA TVAAATAWWT AHGLLPLCAP FHMGLNYVPV SGSAVPAVTN  480
QPRVDITERR EEISGPPLDA KHLEPEFSEA LQEQHSTSKS PTLSLSDSEE SKGLNSSNKS  540
TAKKTDSAAV TDVNDSNKPK GRKRVDRSSC GSNTPSSSEV ETDALEKLEK GKEELREPVV  600
SQPIADSSGR RSRSSSSTSD SWKEVSEEGR LAFQALFSRE VLPQSFSPPH DSKNKGKNTN  660
EKNKDNADEK GDEGYLLDLN GKMCMNSAID QELENNSSLR CLNITEGDY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01060.3	8e-48	MYB_related family protein