PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027108261.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 830aa MW: 90045.4 Da PI: 6.4236 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 66.1 | 4.7e-21 | 125 | 180 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe+lF+++++p++++r eL+k+l L++rqVk+WFqNrR+++k XP_027108261.1 125 KKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 180 688999***********************************************999 PP | |||||||
2 | START | 203.7 | 7.8e-64 | 338 | 565 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 ela++a++elvk+a+ +ep+W +s e++n +e++++f++ + + +ea+r++g+v+ ++ lve+l+d + +W e+++ + +t+ XP_027108261.1 338 ELALAAMNELVKLAQTDEPLWLRSLeggrEILNHEEYMRTFTPCIGvkptgFVTEASRETGMVIINSLALVETLMDAN-KWAEMFPcmiaRTSTT 431 5899**************************************99889*******************************.**************** PP EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEE CS START 83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwv 167 +vis g galqlm elq+lsplvp R++ f+R+++q+ +g+w++vdvSvds ++ + s+ + R+++lpSg+l+e+++ng+skvtwv XP_027108261.1 432 DVISGGmggtrnGALQLMHGELQVLSPLVPvREVNFLRFCKQHAEGVWAVVDVSVDSIRETSGggaSPTFPRSRRLPSGCLVEDMPNGYSKVTWV 526 ************************************************************999999***************************** PP E-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 168 ehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 eh+d++++++h+l+r+l++ g+ +g ++w atlqrqce+ XP_027108261.1 527 EHADYDESMIHQLYRPLIGAGMGFGSQRWIATLQRQCEC 565 *************************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 830 aa Download sequence |
MNFGGFLDNN SVGGGGAKIV ADIPYSDSNN VNSSNTNMPA SAAIAQPRLA TQSLSKSMFS 60 SPGLSLALQT SLEGQEVRRM SENYESNMNF GRRSRDEEHE SRSGSDNMEG GSGDDQEAAD 120 KPPRKKRYHR HTPQQIQELE ALFKECPHPD EKQRLELSKR LCLETRQVKF WFQNRRTQMK 180 TQLERHENSI LRQENDKLRA ENMSIREAMR NPICTNCGGP AIIGEVSLEE QHLRIENARL 240 KDELDRVCTL AGKFLGRPIS SSAASMAPPL PNSSLELGVG GNGFASLSTV PATLPLGPPD 300 FGVGIGNPLS VMAGPTKAAA TTGGTGIERS LEKSMYLELA LAAMNELVKL AQTDEPLWLR 360 SLEGGREILN HEEYMRTFTP CIGVKPTGFV TEASRETGMV IINSLALVET LMDANKWAEM 420 FPCMIARTST TDVISGGMGG TRNGALQLMH GELQVLSPLV PVREVNFLRF CKQHAEGVWA 480 VVDVSVDSIR ETSGGGASPT FPRSRRLPSG CLVEDMPNGY SKVTWVEHAD YDESMIHQLY 540 RPLIGAGMGF GSQRWIATLQ RQCECLAILM SSSVAPRDHT AITASGRRSM LKLAQRMTDN 600 FCAGVCASTV HKWNKLCAGN VDEDVRVMTR KSVDDPGEPP GIVLSAATSV WLPVSPQRLF 660 DFLRDERLRS EWDILSNGGP MQEMAHIAKG QDHGNCVSLL RASAMNANQS SMLILQETCI 720 DAAGSLVVYA PVDIPAMHVV MNGGDSAYVA LLPSGFAIVP DGPGSRGPLP NGLTNGPTSH 780 RVSGSLLTVA FQILVNSLPT AKLTVESVET VNNLISCTVQ KIKAALHCES |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 0.0 | HD-ZIP family protein |