PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027108199.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 216aa MW: 24711.5 Da PI: 9.264 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 93.6 | 9.3e-30 | 10 | 58 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 rien + rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye+ XP_027108199.1 10 RIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFG 58 8**********************************************95 PP | |||||||
2 | K-box | 82.7 | 8.1e-28 | 79 | 171 | 6 | 98 |
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++ +e+++++l+qe a + k+ie L+ ++R+llGe+L s++++eLqqLe+qLe+s++ iR++K++++ eqie+l++kek l+ en +L +k XP_027108199.1 79 NNPSAEQNMQQLKQETASMVKKIELLEASKRKLLGEGLVSCTVEELQQLERQLERSVNCIRARKMQVFQEQIEKLKEKEKVLEAENDKLLEKC 171 344899***********************************************************************************9985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence |
MVRGKTQMRR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSP RGKLYEFGSS 60 SMKEIIERYQ KHAKDVRANN PSAEQNMQQL KQETASMVKK IELLEASKRK LLGEGLVSCT 120 VEELQQLERQ LERSVNCIRA RKMQVFQEQI EKLKEKEKVL EAENDKLLEK CGAEPPQTSK 180 ENTEIVPCTE SSEVSDVETG LFIGPPERRN KLVLKN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45660.1 | 2e-77 | MIKC_MADS family protein |