PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027108173.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

GRF

Protein Properties

Length: 451aa MW: 48949 Da PI: 8.9555

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027108173.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	73.9	1.8e-23	123	168	1	46
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskees 46 daepgrCrRtDGKkWRC r+v++++k+CErH+hrg++rsrk++e+s XP_027108173.1 123 DAEPGRCRRTDGKKWRCYRDVVPNQKYCERHMHRGCQRSRKHVETS 168 79*****************************************975 PP
2	WRC	70.1	2.6e-22	338	374	3	39
WRC 3 epgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrs 39 ep+rCrRtDGKkWRCsr+v+++kk+CErHlhrg ++ XP_027108173.1 338 EPLRCRRTDGKKWRCSRDVVPDKKYCERHLHRGVKKA 374 99*******************************9875 PP
3	QLQ	42.6	1.8e-15	54	88	3	37
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FTa+Qlq+L Q+ +++y++a++PvP +L++++++ XP_027108173.1 54 FTAEQLQQLQLQVVIFRYIVAGLPVPIDLVLPVWR 88 *********************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence
MQPQLLSING KGVVGRDGTR KKREGSPLSN LELGIGDSRG LRGVVKEEKD QLVFTAEQLQ 60 QLQLQVVIFR YIVAGLPVPI DLVLPVWRSL AASLGSSKSG IYDQLPSFLG FTPRDFDYRS 120 MMDAEPGRCR RTDGKKWRCY RDVVPNQKYC ERHMHRGCQR SRKHVETSED DTKANSSAIN 180 SDIFASSMNT SNATTTDSRT PAMLSTSLNL TVPCPSISKS VPETLKSSSA PYTGNGNWES 240 KGDNVMTVNN GTSTSSLIRV LADKNNTKYG SNCTDGIGFE CSNISTNKID QSSGGNKKSG 300 DASVVPGFGL SPKSVLQCST ASNCNQLNFD CKTEVEVEPL RCRRTDGKKW RCSRDVVPDK 360 KYCERHLHRG VKKAVAGSKL IIGAPAAPPS HNIQTCGTAT KVEKLNTNLS ISIAANPQHM 420 SDADSSSFSN SDATTVTDEN VTSSHILTLS P

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence

MQPQLLSING KGVVGRDGTR KKREGSPLSN LELGIGDSRG LRGVVKEEKD QLVFTAEQLQ  60
QLQLQVVIFR YIVAGLPVPI DLVLPVWRSL AASLGSSKSG IYDQLPSFLG FTPRDFDYRS  120
MMDAEPGRCR RTDGKKWRCY RDVVPNQKYC ERHMHRGCQR SRKHVETSED DTKANSSAIN  180
SDIFASSMNT SNATTTDSRT PAMLSTSLNL TVPCPSISKS VPETLKSSSA PYTGNGNWES  240
KGDNVMTVNN GTSTSSLIRV LADKNNTKYG SNCTDGIGFE CSNISTNKID QSSGGNKKSG  300
DASVVPGFGL SPKSVLQCST ASNCNQLNFD CKTEVEVEPL RCRRTDGKKW RCSRDVVPDK  360
KYCERHLHRG VKKAVAGSKL IIGAPAAPPS HNIQTCGTAT KVEKLNTNLS ISIAANPQHM  420
SDADSSSFSN SDATTVTDEN VTSSHILTLS P

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45480.1	2e-37	GRF family protein