PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027108172.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

GRF

Protein Properties

Length: 454aa MW: 49278.3 Da PI: 8.7381

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027108172.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	73.9	1.8e-23	126	171	1	46
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskees 46 daepgrCrRtDGKkWRC r+v++++k+CErH+hrg++rsrk++e+s XP_027108172.1 126 DAEPGRCRRTDGKKWRCYRDVVPNQKYCERHMHRGCQRSRKHVETS 171 79*****************************************975 PP
2	WRC	70.1	2.6e-22	341	377	3	39
WRC 3 epgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrs 39 ep+rCrRtDGKkWRCsr+v+++kk+CErHlhrg ++ XP_027108172.1 341 EPLRCRRTDGKKWRCSRDVVPDKKYCERHLHRGVKKA 377 99*******************************9875 PP
3	QLQ	42.6	1.8e-15	57	91	3	37
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FTa+Qlq+L Q+ +++y++a++PvP +L++++++ XP_027108172.1 57 FTAEQLQQLQLQVVIFRYIVAGLPVPIDLVLPVWR 91 *********************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence
MQPQLLSIND DVGKGVVGRD GTRKKREGSP LSNLELGIGD SRGLRGVVKE EKDQLVFTAE 60 QLQQLQLQVV IFRYIVAGLP VPIDLVLPVW RSLAASLGSS KSGIYDQLPS FLGFTPRDFD 120 YRSMMDAEPG RCRRTDGKKW RCYRDVVPNQ KYCERHMHRG CQRSRKHVET SEDDTKANSS 180 AINSDIFASS MNTSNATTTD SRTPAMLSTS LNLTVPCPSI SKSVPETLKS SSAPYTGNGN 240 WESKGDNVMT VNNGTSTSSL IRVLADKNNT KYGSNCTDGI GFECSNISTN KIDQSSGGNK 300 KSGDASVVPG FGLSPKSVLQ CSTASNCNQL NFDCKTEVEV EPLRCRRTDG KKWRCSRDVV 360 PDKKYCERHL HRGVKKAVAG SKLIIGAPAA PPSHNIQTCG TATKVEKLNT NLSISIAANP 420 QHMSDADSSS FSNSDATTVT DENVTSSHIL TLSP

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence

MQPQLLSIND DVGKGVVGRD GTRKKREGSP LSNLELGIGD SRGLRGVVKE EKDQLVFTAE  60
QLQQLQLQVV IFRYIVAGLP VPIDLVLPVW RSLAASLGSS KSGIYDQLPS FLGFTPRDFD  120
YRSMMDAEPG RCRRTDGKKW RCYRDVVPNQ KYCERHMHRG CQRSRKHVET SEDDTKANSS  180
AINSDIFASS MNTSNATTTD SRTPAMLSTS LNLTVPCPSI SKSVPETLKS SSAPYTGNGN  240
WESKGDNVMT VNNGTSTSSL IRVLADKNNT KYGSNCTDGI GFECSNISTN KIDQSSGGNK  300
KSGDASVVPG FGLSPKSVLQ CSTASNCNQL NFDCKTEVEV EPLRCRRTDG KKWRCSRDVV  360
PDKKYCERHL HRGVKKAVAG SKLIIGAPAA PPSHNIQTCG TATKVEKLNT NLSISIAANP  420
QHMSDADSSS FSNSDATTVT DENVTSSHIL TLSP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45480.1	2e-37	GRF family protein