PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027108074.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 623aa MW: 66167.9 Da PI: 6.506

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027108074.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.2	4.6e-16	352	398	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+k Lq XP_027108074.1 352 VHNLSERRRRDRINEKMRALQELIPNC-----NKADKASMLDEAIEYLKTLQ 398 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 623 aa Download sequence
MPSVRSGETY LNQEDEMGPW LNYPVDDGFR SDFCSEILPE ISGVTGNEPS TLNSFGSVVK 60 GSCNQVPQHS YTVPVHNGLD IEARNASKVS SSRTGLLSPY SSQQCQLSVA PAGSGVSSVV 120 MNTTSNNPVT FFGDTVQGQA SSGGLVSMKM QNQKVASNFL NFTHFSRPAA LVRANLERTD 180 GVAASCSSGI EKVSAVSSTS PVKSTHKPSS NSQKDICVHS QPKLVSTKVD SRPSFDKPPE 240 ESCSAQRPDN LHWDDSIKND KSSSPIISSS ITKEVKDGEN PVEPVVAASS VCSANSGEGA 300 SNDQMHTLKR KHCDNEESES RSEDIEEESV GIKKVAHARG VSGSKRSRAA EVHNLSERRR 360 RDRINEKMRA LQELIPNCNK ADKASMLDEA IEYLKTLQLQ VQVMSMGAGL CMPPMMFPTG 420 LQHMHPAHVP HFPPMAGGMG LGMGYGMGML DLNSGSPRFP IFPVPPMQGA HFPSPTISGS 480 SGFQGLAGSN LQVFGHPGQG GPMSIPRAPL VPLVGQAPIS SAVGVDTSRM GIHVEASNAS 540 PTLNSVVEVQ NKNSQLNHKT DTGSSISQTS SQLQATSKEF DQSAMTSKDD QAPDVCAAAS 600 VNMASTTDLV CDKEKGSNGM CKE

Sequence ? help Back to Top

Protein Sequence Length: 623 aa Download sequence

MPSVRSGETY LNQEDEMGPW LNYPVDDGFR SDFCSEILPE ISGVTGNEPS TLNSFGSVVK  60
GSCNQVPQHS YTVPVHNGLD IEARNASKVS SSRTGLLSPY SSQQCQLSVA PAGSGVSSVV  120
MNTTSNNPVT FFGDTVQGQA SSGGLVSMKM QNQKVASNFL NFTHFSRPAA LVRANLERTD  180
GVAASCSSGI EKVSAVSSTS PVKSTHKPSS NSQKDICVHS QPKLVSTKVD SRPSFDKPPE  240
ESCSAQRPDN LHWDDSIKND KSSSPIISSS ITKEVKDGEN PVEPVVAASS VCSANSGEGA  300
SNDQMHTLKR KHCDNEESES RSEDIEEESV GIKKVAHARG VSGSKRSRAA EVHNLSERRR  360
RDRINEKMRA LQELIPNCNK ADKASMLDEA IEYLKTLQLQ VQVMSMGAGL CMPPMMFPTG  420
LQHMHPAHVP HFPPMAGGMG LGMGYGMGML DLNSGSPRFP IFPVPPMQGA HFPSPTISGS  480
SGFQGLAGSN LQVFGHPGQG GPMSIPRAPL VPLVGQAPIS SAVGVDTSRM GIHVEASNAS  540
PTLNSVVEVQ NKNSQLNHKT DTGSSISQTS SQLQATSKEF DQSAMTSKDD QAPDVCAAAS  600
VNMASTTDLV CDKEKGSNGM CKE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	357	362	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	4e-40	bHLH family protein