PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027108029.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 523aa MW: 56754.2 Da PI: 9.4458

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027108029.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.2e-05	70	92	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H XP_027108029.1 70 FICEICNKGFQRDQNLQLHRRGH 92 89*******************88 PP
2	zf-C2H2	11.8	0.00074	146	168	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + XP_027108029.1 146 WKCEKCSKKYAVQSDWKAHSKIC 168 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 523 aa Download sequence
MMSDEGLASS LRGFIQDPNP NLPNPNPNNS NPNPNSNTAK RKRNLPGTPA DPDAEVVALS 60 PKSLMATNRF ICEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RTNKEVKKKV YICPEKTCVH 120 HDPSRALGDL TGIKKHFSRK HGEKKWKCEK CSKKYAVQSD WKAHSKICGT REYKCDCGTL 180 FSRKDSFITH RAFCDALAEE SARFAPIPSA NLNFRNELFN GGLSSLQPAG NPQFSNSIAG 240 LDPATGQLNL NGQKPRLPLW LDNANTQLNN PIGNHPGNSN AFLASSSTSL PELVQMTPTN 300 MLGLSSQNQW FNIGGNASSS GLPRVLKEEE ENRGNLSDHI SSLYYNNGQN SSQHETAPAH 360 MSATALLQKA AQMGSTRSNS AIFGTGFGLM SSSLSSLSNF NSLNQSRNEL QNFGQAENLN 420 GLMTSTSQST ITTNQGDGLL LGNMSSSNNL VGNLRHPSAP PTIMPGSTDR GGSQSKSSGN 480 EAEGGLTRDF LGVGGNESRP FLQQNELVKF ASSMSSAMDF GNQ

Sequence ? help Back to Top

Protein Sequence Length: 523 aa Download sequence

MMSDEGLASS LRGFIQDPNP NLPNPNPNNS NPNPNSNTAK RKRNLPGTPA DPDAEVVALS  60
PKSLMATNRF ICEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RTNKEVKKKV YICPEKTCVH  120
HDPSRALGDL TGIKKHFSRK HGEKKWKCEK CSKKYAVQSD WKAHSKICGT REYKCDCGTL  180
FSRKDSFITH RAFCDALAEE SARFAPIPSA NLNFRNELFN GGLSSLQPAG NPQFSNSIAG  240
LDPATGQLNL NGQKPRLPLW LDNANTQLNN PIGNHPGNSN AFLASSSTSL PELVQMTPTN  300
MLGLSSQNQW FNIGGNASSS GLPRVLKEEE ENRGNLSDHI SSLYYNNGQN SSQHETAPAH  360
MSATALLQKA AQMGSTRSNS AIFGTGFGLM SSSLSSLSNF NSLNQSRNEL QNFGQAENLN  420
GLMTSTSQST ITTNQGDGLL LGNMSSSNNL VGNLRHPSAP PTIMPGSTDR GGSQSKSSGN  480
EAEGGLTRDF LGVGGNESRP FLQQNELVKF ASSMSSAMDF GNQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	1e-109	C2H2 family protein