PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027108015.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family C3H
Protein Properties Length: 127aa    MW: 14370.2 Da    PI: 8.2021
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027108015.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.66.8e-115982427
                    ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                      C++f rtG C+yGd+Ck+ H++
  XP_027108015.1 59 GVCNRFVRTGSCQYGDSCKYYHPK 82
                    57********************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    
MPLGKYYCDY CDKEFQDTAA ARKRHLQGVH HQRAKALWYD SLRSDVNQIP DPGTLGKQGV  60
CNRFVRTGSC QYGDSCKYYH PKQNPNDQVL PGQMSSQNVQ ISWGNLPPSL MPPPEAGYPP  120
LPFIDWG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.14e-46C3H family protein