PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027108014.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family C3H
Protein Properties Length: 131aa    MW: 15006 Da    PI: 8.1153
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027108014.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.57.1e-116891427
                    ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                      C++f rtG C+yGd+Ck+ H++
  XP_027108014.1 68 GVCNRFVRTGSCQYGDSCKYYHPK 91
                    57********************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    
MPLGKYYCDY CDKEFQDTAA ARKRHLQGVH HQRAKALWYD SLRFLQMLLF LLADVNQIPD  60
PGTLGKQGVC NRFVRTGSCQ YGDSCKYYHP KQNPNDQVLP DVQSECANFM GQPTSILDAS  120
SRSWISSFTL Y
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.11e-29C3H family protein