PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027107757.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 357aa MW: 39281.4 Da PI: 5.0327

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027107757.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.4	6.1e-14	181	226	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ ++f L ++P + kK++K++iL A+eY+k+Lq XP_027107757.1 181 HIIAERKRREQLSQRFMALSAIVPGL-----KKMDKSSILGDAIEYLKHLQ 226 899*********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence
MDNSASSWFS QLGMEDPLSN DDFNIMDFLN DELSAAPADD FQNSSFPEGN PSFSNIFPSC 60 NSTPALCEPS VMEAHPVGFE TPAKQHKTNN GYDSSNIHNM PNFGQASSSP MILTFGNPNM 120 PEINPHQVTL GTLNPEDDAV SEVLTSHGSF AKLDEAAKTT VQTKAKKPGG RVRPPSQTYD 180 HIIAERKRRE QLSQRFMALS AIVPGLKKMD KSSILGDAIE YLKHLQERVK TLEEKAARQT 240 MESVVLVKRS QLLLEDEGSS DEVAGPNEQP LPEFEAKVCD KNVLLRIHCK NYKGVLIKIL 300 SQIDKLNLAV LNTCVSPFGN FALDITIIAE AEKEVNLTTK ELVDTLRSVL QQGKHAA

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence

MDNSASSWFS QLGMEDPLSN DDFNIMDFLN DELSAAPADD FQNSSFPEGN PSFSNIFPSC  60
NSTPALCEPS VMEAHPVGFE TPAKQHKTNN GYDSSNIHNM PNFGQASSSP MILTFGNPNM  120
PEINPHQVTL GTLNPEDDAV SEVLTSHGSF AKLDEAAKTT VQTKAKKPGG RVRPPSQTYD  180
HIIAERKRRE QLSQRFMALS AIVPGLKKMD KSSILGDAIE YLKHLQERVK TLEEKAARQT  240
MESVVLVKRS QLLLEDEGSS DEVAGPNEQP LPEFEAKVCD KNVLLRIHCK NYKGVLIKIL  300
SQIDKLNLAV LNTCVSPFGN FALDITIIAE AEKEVNLTTK ELVDTLRSVL QQGKHAA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	185	190	ERKRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	6e-53	bHLH family protein