PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027107754.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 341aa MW: 38108.1 Da PI: 4.9494

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027107754.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.4	4.7e-12	165	210	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +Er+RR+++ ++f L +l+P + kK++K ++L A+ Y+k+Lq XP_027107754.1 165 HIVAERKRREQLSQRFVALSTLVPGL-----KKMDKTSVLGDAISYLKHLQ 210 8899********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence
MDNPVSSSWF SELGMEDSFF NDQYDVMDFL DEEFLNANLS PEGNTNSSTF IPISTCSTTL 60 SAFSTMDAPP ISTERPAKQQ KSDDLNSSSL GNIPNHHNQP MILTFGNPVM PAEINPQQIN 120 LEDDAVSEIL KSHGSFVNLE EATRSSQKRK KTGGRTRPAS QTYDHIVAER KRREQLSQRF 180 VALSTLVPGL KKMDKTSVLG DAISYLKHLQ ERVKTLEEQA AKQNMESMVL VKRSQLLVED 240 EGSSDEMGGS DEQPLPEIEA KLCNKNILLR VHCRNYRGVL VKILSEVEML NLTLIHTSVA 300 PFGRLALDVT LMAEMEKEFN LTMQELVKSL QSALQRGKQG D

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	169	174	ERKRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	1e-56	bHLH family protein