PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027107745.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 344aa MW: 38112.1 Da PI: 6.2429

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027107745.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.9	4.1e-09	165	210	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ f+ L ++lP + kK++K ++L A++ +k+Lq XP_027107745.1 165 HIMAERKRRKHLGLLFSSLSSILPGL-----KKMDKTSVLGDAINQLKHLQ 210 999*********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence
MDNSASSWFS AQEMEDHFLG DQCDIMNPFE EDLFGAFGDD LHNCDLPTKG NSSIFPIIET 60 NNSATRLCVS AAIEAPPIVT ERPTQLQNPN GCSWSTVYNF SSFDQPSSSP MLLTFGTLNP 120 GENKVCDVLS SNGSFVNFDH RTTRIQKRGK RTGGRTRSPS QTYDHIMAER KRRKHLGLLF 180 SSLSSILPGL KKMDKTSVLG DAINQLKHLQ EKVKTLEEQV TKQTVESVVL VKKSQRLVAD 240 DVSSDERGCN NNNQLLFPQI EAKVCDKEVL LKVHCENHQP GVLIKLLSKV ENLNLAVTNT 300 SVTPFGNSAL EVTIIAELEK EFNMTTKELA KNLGSTLHLV AQES

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence

MDNSASSWFS AQEMEDHFLG DQCDIMNPFE EDLFGAFGDD LHNCDLPTKG NSSIFPIIET  60
NNSATRLCVS AAIEAPPIVT ERPTQLQNPN GCSWSTVYNF SSFDQPSSSP MLLTFGTLNP  120
GENKVCDVLS SNGSFVNFDH RTTRIQKRGK RTGGRTRSPS QTYDHIMAER KRRKHLGLLF  180
SSLSSILPGL KKMDKTSVLG DAINQLKHLQ EKVKTLEEQV TKQTVESVVL VKKSQRLVAD  240
DVSSDERGCN NNNQLLFPQI EAKVCDKEVL LKVHCENHQP GVLIKLLSKV ENLNLAVTNT  300
SVTPFGNSAL EVTIIAELEK EFNMTTKELA KNLGSTLHLV AQES

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	171	195	KRRKHLGLLFSSLSSILPGLKKMDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	1e-37	bHLH family protein