PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027107651.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | NF-YC | ||||||||
Protein Properties | Length: 260aa MW: 29011.7 Da PI: 5.3131 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 170.4 | 2.2e-53 | 75 | 178 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql+sfw +q i++ t+fknh+lPlarikki+kadedv+misaeaP+++++ace+fileltlr+w+h+eenkrrtl+k+diaaa++rtd+fdfl XP_027107651.1 75 QLQSFWGNQrqeIDRLTEFKNHSLPLARIKKIMKADEDVRMISAEAPIVFARACEMFILELTLRAWNHTEENKRRTLQKNDIAAAIARTDVFDFL 169 89****999888999******************************************************************************** PP NF-YC 93 vdivprdel 101 vdi+pr++l XP_027107651.1 170 VDIIPREDL 178 ******987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence |
MDKQDHSQPQ VSGIVGGMPQ LSYATNVYTG NPGQGSLVTS VVASQPTGQT TGVQIGEQRA 60 YQQIHQQQQQ ELEQQLQSFW GNQRQEIDRL TEFKNHSLPL ARIKKIMKAD EDVRMISAEA 120 PIVFARACEM FILELTLRAW NHTEENKRRT LQKNDIAAAI ARTDVFDFLV DIIPREDLKD 180 EALLAVPRNA MPLGESSGSL PYYYMQPQQM APARPPAPGL PVNTPAIDPT LYGQQPHPYM 240 APHLWSEATA PQQPQSPSDS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 148 | 154 | RRTLQKN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08970.3 | 2e-71 | NF-YC family protein |