PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027107498.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 811aa MW: 92420.7 Da PI: 6.0708

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027107498.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	98.7	6.1e-31	88	179	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGFs+r+s+s++s+++g i++r fvC keg+r+ ++k+ +++ +r+r+ tr+gCka+l vk +++gkw v++++ eHnH+l+p XP_027107498.1 88 FYNSYARRVGFSTRVSSSRRSRKDGAIIQRSFVCAKEGFRNLNEKRtkDREIKRPRTITRVGCKASLSVKIQDSGKWLVSNFVREHNHQLVP 179 9*************************************998888545677889*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 811 aa Download sequence
MENEVMDYDI GLGGSGGGGE DDGLYIEQEE DEPVVDGSPT AAGSSAGAGA VGGFQGSASL 60 ETYIPEADPD LEPYEGMEFE SEEAAKAFYN SYARRVGFST RVSSSRRSRK DGAIIQRSFV 120 CAKEGFRNLN EKRTKDREIK RPRTITRVGC KASLSVKIQD SGKWLVSNFV REHNHQLVPP 180 DQVHCLRSHR QISGPAKTLI DTLQAAGMGP RRIMSALIKE YGGISKVGFT EVDCRNYMRN 240 NRQRSLEGDI QLLLDCLRQM QAENPNFFYA VQGEEDHSTG NVFWADPKAR ANYTYFGDTV 300 TFDTTYRSNR YRLPFAPFTG VNHHGQPVLF GCAFLINESE ASFVWLFKTW LAAMSGCPPV 360 SITTDHDSVI QSAVMQVLPD TRHRFCEWHI FKKCQEKLSH VFLKHPNFEA DLQKCVNLTE 420 SIDEFESSWF SLLDKFELRD HEWLQALYSA RSQWVPVYLR DTFFAEMSIT QRSDSMNSYF 480 DGYVNASTNL NQFFRLYEKA LESRNEKEVK ADYDTMNTSP TLRTPSPMEK QASELYTRKL 540 FTRFQEELVG TLTFMASKAE DDGDVTTYQV AKFGEDHRDY YVRFNVLEMK AFCSCRMFEF 600 SGLLCRHVLA VFRVTNVLTL PSHYILKRWT RNAKSSVLLE EHISDVFSSY LESHTVRYNT 660 LRHEALKFVD DGAESVDLYN VAMAALAEAS EKVSLETKNE GRISANNGRF RDDSRRNGIQ 720 ANHKNRDQNK GSFAQQLSEE DMDTKIHELM QEVESANRRC EVYRGNLLSV LKDIEEHKQL 780 LSIKVQNVKL SMRDGPQKIL EALSVASCQD F

Sequence ? help Back to Top

Protein Sequence Length: 811 aa Download sequence

MENEVMDYDI GLGGSGGGGE DDGLYIEQEE DEPVVDGSPT AAGSSAGAGA VGGFQGSASL  60
ETYIPEADPD LEPYEGMEFE SEEAAKAFYN SYARRVGFST RVSSSRRSRK DGAIIQRSFV  120
CAKEGFRNLN EKRTKDREIK RPRTITRVGC KASLSVKIQD SGKWLVSNFV REHNHQLVPP  180
DQVHCLRSHR QISGPAKTLI DTLQAAGMGP RRIMSALIKE YGGISKVGFT EVDCRNYMRN  240
NRQRSLEGDI QLLLDCLRQM QAENPNFFYA VQGEEDHSTG NVFWADPKAR ANYTYFGDTV  300
TFDTTYRSNR YRLPFAPFTG VNHHGQPVLF GCAFLINESE ASFVWLFKTW LAAMSGCPPV  360
SITTDHDSVI QSAVMQVLPD TRHRFCEWHI FKKCQEKLSH VFLKHPNFEA DLQKCVNLTE  420
SIDEFESSWF SLLDKFELRD HEWLQALYSA RSQWVPVYLR DTFFAEMSIT QRSDSMNSYF  480
DGYVNASTNL NQFFRLYEKA LESRNEKEVK ADYDTMNTSP TLRTPSPMEK QASELYTRKL  540
FTRFQEELVG TLTFMASKAE DDGDVTTYQV AKFGEDHRDY YVRFNVLEMK AFCSCRMFEF  600
SGLLCRHVLA VFRVTNVLTL PSHYILKRWT RNAKSSVLLE EHISDVFSSY LESHTVRYNT  660
LRHEALKFVD DGAESVDLYN VAMAALAEAS EKVSLETKNE GRISANNGRF RDDSRRNGIQ  720
ANHKNRDQNK GSFAQQLSEE DMDTKIHELM QEVESANRRC EVYRGNLLSV LKDIEEHKQL  780
LSIKVQNVKL SMRDGPQKIL EALSVASCQD F

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1 family protein