PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027107284.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

NF-YC

Protein Properties

Length: 277aa MW: 30592.7 Da PI: 4.9553

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027107284.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	58.5	1.5e-18	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t+ ++ +v++ ++fdfl ++v + XP_027107284.1 6 DTRFPAARIKKIMQADEDVGKIAMAVPVLVSKALELFLQDLCDRTYDITLQRGAKTVSSLHLKHCVQSYNVFDFLREVVSK 86 5789************************************************************************99976 PP

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence
MRKKLDTRFP AARIKKIMQA DEDVGKIAMA VPVLVSKALE LFLQDLCDRT YDITLQRGAK 60 TVSSLHLKHC VQSYNVFDFL REVVSKVPDY GHSDAASADM SKRRKILPEE YNDSDEESRK 120 NRMEVCHSSS SGRGRGRGRG RGRGRSSRIT DREAIRHENE SESSMSIQQS SKQISSPGST 180 ADTLAELESS KENIKSSDND NVLQNIDLNS GVGEGGDKTA ATLTEPSTSS AGPADTKGEE 240 YPGWALSEMD RMAIDPSQIA HLSSRLDEEE EDYDEEG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	142	RGRGRGRGRG
2	133	143	RGRGRGRGRGR
3	135	144	RGRGRGRGRG
4	135	145	RGRGRGRGRGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	6e-67	NF-YC family protein