PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027106832.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 530aa MW: 57101.6 Da PI: 8.0207

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027106832.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.1	5.6e-12	458	503	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el P+ +k + a++L +AveYIk+Lq XP_027106832.1 458 SIAERMRRTRISERMKKLQELFPNM----DKQTNTADMLDLAVEYIKDLQ 503 689*******************7....688***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 530 aa Download sequence
MPSIPSLGFT HISSSSLFPT KSSPKKNSPN PEILLISANI LLLGLKISSN MYSPEAISRD 60 ISNNLMFSSN TSSGANSFRN GFLDGDFFKS SKEILNSSSD LFQQPASAAA AAHFQQQNGG 120 LMRYRSAPSA YFASYLDSSK DNNNTTNTNT SGGSNTNGDS SESDSMFSAF LNEPTNESPY 180 HHQRNNPHQH QQQVQPQGSC GAMKLEMNEV ESNPSGMQQN RNGNGFCSSN SSSSTMVSVG 240 YQAAVCAGGG TVVGSYTVPL GVENQGQVRM NSNANGSNLI RQSSSPAGFF SGFDAVGEVG 300 NFRSGNGTNG EASSSTGGLN NRLNFNSGPS SSSRFMPSIA ENGNQNGGTG SSEHRQLGNG 360 NETNQGYVSS FLNDTWSDSP FNSLKRNRDG DMKVYSSFNG LENQDGGPRN QTPGLIHHLS 420 LPKTAGEMAA IEKYMQFQQD SVPCKIRAKR GCATHPRSIA ERMRRTRISE RMKKLQELFP 480 NMDKQTNTAD MLDLAVEYIK DLQNQVQTLT ETRAKCICSS KQPQCSHPAV

Sequence ? help Back to Top

Protein Sequence Length: 530 aa Download sequence

MPSIPSLGFT HISSSSLFPT KSSPKKNSPN PEILLISANI LLLGLKISSN MYSPEAISRD  60
ISNNLMFSSN TSSGANSFRN GFLDGDFFKS SKEILNSSSD LFQQPASAAA AAHFQQQNGG  120
LMRYRSAPSA YFASYLDSSK DNNNTTNTNT SGGSNTNGDS SESDSMFSAF LNEPTNESPY  180
HHQRNNPHQH QQQVQPQGSC GAMKLEMNEV ESNPSGMQQN RNGNGFCSSN SSSSTMVSVG  240
YQAAVCAGGG TVVGSYTVPL GVENQGQVRM NSNANGSNLI RQSSSPAGFF SGFDAVGEVG  300
NFRSGNGTNG EASSSTGGLN NRLNFNSGPS SSSRFMPSIA ENGNQNGGTG SSEHRQLGNG  360
NETNQGYVSS FLNDTWSDSP FNSLKRNRDG DMKVYSSFNG LENQDGGPRN QTPGLIHHLS  420
LPKTAGEMAA IEKYMQFQQD SVPCKIRAKR GCATHPRSIA ERMRRTRISE RMKKLQELFP  480
NMDKQTNTAD MLDLAVEYIK DLQNQVQTLT ETRAKCICSS KQPQCSHPAV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	7e-57	bHLH family protein