PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027106512.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 421aa MW: 46422.6 Da PI: 5.6728

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027106512.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.7	0.0017	4	26	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F + L H+r+H XP_027106512.1 4 HRCKLCSRNFANGRALGGHMRSH 26 79********************9 PP
2	zf-C2H2	12.5	0.00043	267	289	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k F++ L H +H XP_027106512.1 267 YRCETCNKAFRSYQALGGHRASH 289 9***********99999998887 PP

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence
MEKHRCKLCS RNFANGRALG GHMRSHMMNL CAASKAKQEF IKEEHEEEEV MNINDERQIS 60 EEFESVPSSS FSSSSSSEDE EINPKKKVGM VMDQEFCFGG VEVTAAAADS VVVQDRESET 120 ESSKNPICRR SKRVRKSRVS DAVQFSGYIN DRMAELKKPK SGKQGRFSCE LPFADAEPVS 180 SISDTTTEEV VAYCLMMLSR DKWKKEDNEE EAMYGGEEVE EEEEEAEEGK ADHEEPKKQK 240 KNKDAKSQYC HDFGVVKVTK SRTRGKYRCE TCNKAFRSYQ ALGGHRASHK RIKAHNSNST 300 EEEVAGVETG NAASAAAVSS AVVEEKIHEC PVCYRIFSSG QALGGHKRSH VMGAAAVAAA 360 AAAAAATTHV SIRTSPAAKP FSRFGETFID LNLPAPVDDD EISQIELSAV SDAEFVNPFK 420 Q

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence

MEKHRCKLCS RNFANGRALG GHMRSHMMNL CAASKAKQEF IKEEHEEEEV MNINDERQIS  60
EEFESVPSSS FSSSSSSEDE EINPKKKVGM VMDQEFCFGG VEVTAAAADS VVVQDRESET  120
ESSKNPICRR SKRVRKSRVS DAVQFSGYIN DRMAELKKPK SGKQGRFSCE LPFADAEPVS  180
SISDTTTEEV VAYCLMMLSR DKWKKEDNEE EAMYGGEEVE EEEEEAEEGK ADHEEPKKQK  240
KNKDAKSQYC HDFGVVKVTK SRTRGKYRCE TCNKAFRSYQ ALGGHRASHK RIKAHNSNST  300
EEEVAGVETG NAASAAAVSS AVVEEKIHEC PVCYRIFSSG QALGGHKRSH VMGAAAVAAA  360
AAAAAATTHV SIRTSPAAKP FSRFGETFID LNLPAPVDDD EISQIELSAV SDAEFVNPFK  420
Q

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	3e-42	C2H2 family protein