PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027106510.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 483aa MW: 52048.9 Da PI: 8.2514

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027106510.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50	5.3e-16	307	353	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ Er+RRd+iN+++ +L++l+P++ K +Ka++L +++eY+k+Lq XP_027106510.1 307 VHNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 353 6***********************8.....7****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence
MNQCVPSWEL EENHHAPLPP PPPADPKQTL RAHSNSSSLA PDVPTLDYEV AELTWENGQL 60 AMHGLGLPRL PNGKSLAAPP PAKYNSWEKQ PPVGGTLESI VNPAAIIATH RKSAAQSGCR 120 DCGDELVPWF EDHRRAARAP AAASLTLTMD ALVPCSNSTR NDHREPSTHV PKISACPVGC 180 SSTCVGSCSA AAGNAWLRRM SAAAAAAPME WGSKADQSAS WSATCGRDSR QVTLDTCDRE 240 FGTAAYTSTS FGSPENTSSG KQCTKTVDDQ DSPCQSRYER EAGNEEQKKK GNGKSSVSTK 300 RSRAAAVHNQ SERKRRDKIN QRMKTLQKLV PNSSKTDKAS MLDEVIEYLK QLQAQVNIMS 360 RMNMSPMMLP LALQQQLQMS MMASMGMGMN MGMGMGVMDL NSIGRSNIAG LPPLLHPTAY 420 MPATSAWDGL ADRLAASTSQ AMPDPLAAFL ACQSQPMTMD AYSRMAALYQ QFQQPPGPAS 480 KNK

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence

MNQCVPSWEL EENHHAPLPP PPPADPKQTL RAHSNSSSLA PDVPTLDYEV AELTWENGQL  60
AMHGLGLPRL PNGKSLAAPP PAKYNSWEKQ PPVGGTLESI VNPAAIIATH RKSAAQSGCR  120
DCGDELVPWF EDHRRAARAP AAASLTLTMD ALVPCSNSTR NDHREPSTHV PKISACPVGC  180
SSTCVGSCSA AAGNAWLRRM SAAAAAAPME WGSKADQSAS WSATCGRDSR QVTLDTCDRE  240
FGTAAYTSTS FGSPENTSSG KQCTKTVDDQ DSPCQSRYER EAGNEEQKKK GNGKSSVSTK  300
RSRAAAVHNQ SERKRRDKIN QRMKTLQKLV PNSSKTDKAS MLDEVIEYLK QLQAQVNIMS  360
RMNMSPMMLP LALQQQLQMS MMASMGMGMN MGMGMGVMDL NSIGRSNIAG LPPLLHPTAY  420
MPATSAWDGL ADRLAASTSQ AMPDPLAAFL ACQSQPMTMD AYSRMAALYQ QFQQPPGPAS  480
KNK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	312	317	ERKRRD
2	313	318	RKRRDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	3e-83	bHLH family protein