PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027106330.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | C3H | ||||||||
Protein Properties | Length: 339aa MW: 36322.4 Da PI: 9.1606 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.1 | 5.3e-07 | 219 | 239 | 6 | 27 |
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C++++ G C yG +C+F H++ XP_027106330.1 219 CKTYSS-GSCAYGTKCRFVHDQ 239 999999.*************86 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence |
MENLYGGAGN SSSTRTPKLN SISGNVSPLN LNTPNFIGRG SYQHHHLRRS KSPVFDPYAS 60 SDSGSASPNL ESPLIRYLRS SSSSSGGKLL SPLAAIENFD TPASRSSPVF KTPLNIEEDV 120 LVMDGILVDS SNIKTPKGGG VARMRSPLAP LDSDGRQPSS LSSSLSSGGS ENSFYKTDKC 180 RSSEDSNAGR FGTKCQFAHG KEELRSSRIS KNKLEAQFCK TYSSGSCAYG TKCRFVHDQI 240 KAAVPSMEPS PTSKVLPTPR RAISPITLQN KADFGEKNAF TAFSTDDWSP LDDGIGVTLP 300 SGSSEKTPSK EDVNAHIQAA LYGPTPRKRL PVFTEFCPD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68200.2 | 3e-07 | C3H family protein |