PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027106276.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

CAMTA

Protein Properties

Length: 1036aa MW: 115576 Da PI: 6.1492

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027106276.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	182.5	4.8e-57	20	136	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 +e ++rwl++ ei++iL n++k+ +t e++ +p sgs++L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+v++l+cyYah+een++fqr XP_027106276.1 20 SEaQHRWLRPAEICEILRNYQKFYITPEPPVKPASGSVFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDMLHCYYAHGEENENFQR 114 4449***************************************************************************************** PP CG-1 97 rcywlLeeelekivlvhylevk 118 r+yw+Le++l +iv+vhylevk XP_027106276.1 115 RSYWMLEQDLMHIVFVHYLEVK 136 *****************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 1036 aa Download sequence
MAGSGSQNLG FRLDIKQILS EAQHRWLRPA EICEILRNYQ KFYITPEPPV KPASGSVFLF 60 DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSVDMLH CYYAHGEENE NFQRRSYWML 120 EQDLMHIVFV HYLEVKGNKA NIQCLKDAGT VSSNSQDDSS LSFGSPANSD RLASPYTDMT 180 SPTSTLTSAC EDAESEINHP ASSTFHPYLE TTQEDFRGLE NLDAGFSSSY NVLQSLGSQP 240 TSSASVHDGR TVDHPESNFV PGVERTLDSA SWEEVLGQCT TGMVGGGQKS WNPPAHQANW 300 QGDCLSPMQG VPFGQNLIPD SAYYGKGSLW EQKSLSALLQ SAADPFYMRP DGQEDEAVER 360 DVQKLRQNVE AGYMMSYKAE NGMPSAGSGN CSLVLKQPHL SGIQAEESLK KVDSFSRWMA 420 KELGEVEELP LQSTNGYSWS VIQTEDVVGD SCTPTQLQLD ADTLNFSLSQ DQLFSITDFS 480 PNWAYSRLET KVLITGRFLK SGQEFTRYKW SCMFGELEVP AEVLSEGVLC CHAPPHKAGL 540 VPFYVTCSNR LACSEVREFE YRAGPSQEID FADIPGSDAI EMHLQRRLEK LFLTGPIEYN 600 QMATLSPRDV SPPKGIEEQH GEKLLKEKFY TWLIQKVTEG GKGPSLLDDE GQGVLHLAAA 660 LGFNWAIKPV IISGISIDFR DVNGWTALHW AALCGREDTV AVLVSLGAAP GALTDPSAEH 720 PLGRTPADLA SANGHKGIAG FLAECSLTTH LSRLAVKDSK DDDTLQYSEA KAIKTVSERV 780 ASPITEQDVP DSLSLKDSMA AVSNATQAAA RIHQIFRIQS FQRKQLDIQH INESSSMDEH 840 TLSLIAAKTS RLGKNDWTAH GAAISIQKKF RGWKKRKEFL IIRQRIVKIQ AHVRGHQVRK 900 KYKTIIWSVG ILEKVILRWR RKGSGLRGFR PDAVAKCPSA ENMPRKDDDY DFLQEGRKQT 960 EERLQKALSR VKSMAQYPEA RAQYRRLLTV AEGFRETEDT SNPTLSGSED VSYADEELFD 1020 VEKLSDHDTF MSMAFE

Sequence ? help Back to Top

Protein Sequence Length: 1036 aa Download sequence

MAGSGSQNLG FRLDIKQILS EAQHRWLRPA EICEILRNYQ KFYITPEPPV KPASGSVFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSVDMLH CYYAHGEENE NFQRRSYWML  120
EQDLMHIVFV HYLEVKGNKA NIQCLKDAGT VSSNSQDDSS LSFGSPANSD RLASPYTDMT  180
SPTSTLTSAC EDAESEINHP ASSTFHPYLE TTQEDFRGLE NLDAGFSSSY NVLQSLGSQP  240
TSSASVHDGR TVDHPESNFV PGVERTLDSA SWEEVLGQCT TGMVGGGQKS WNPPAHQANW  300
QGDCLSPMQG VPFGQNLIPD SAYYGKGSLW EQKSLSALLQ SAADPFYMRP DGQEDEAVER  360
DVQKLRQNVE AGYMMSYKAE NGMPSAGSGN CSLVLKQPHL SGIQAEESLK KVDSFSRWMA  420
KELGEVEELP LQSTNGYSWS VIQTEDVVGD SCTPTQLQLD ADTLNFSLSQ DQLFSITDFS  480
PNWAYSRLET KVLITGRFLK SGQEFTRYKW SCMFGELEVP AEVLSEGVLC CHAPPHKAGL  540
VPFYVTCSNR LACSEVREFE YRAGPSQEID FADIPGSDAI EMHLQRRLEK LFLTGPIEYN  600
QMATLSPRDV SPPKGIEEQH GEKLLKEKFY TWLIQKVTEG GKGPSLLDDE GQGVLHLAAA  660
LGFNWAIKPV IISGISIDFR DVNGWTALHW AALCGREDTV AVLVSLGAAP GALTDPSAEH  720
PLGRTPADLA SANGHKGIAG FLAECSLTTH LSRLAVKDSK DDDTLQYSEA KAIKTVSERV  780
ASPITEQDVP DSLSLKDSMA AVSNATQAAA RIHQIFRIQS FQRKQLDIQH INESSSMDEH  840
TLSLIAAKTS RLGKNDWTAH GAAISIQKKF RGWKKRKEFL IIRQRIVKIQ AHVRGHQVRK  900
KYKTIIWSVG ILEKVILRWR RKGSGLRGFR PDAVAKCPSA ENMPRKDDDY DFLQEGRKQT  960
EERLQKALSR VKSMAQYPEA RAQYRRLLTV AEGFRETEDT SNPTLSGSED VSYADEELFD  1020
VEKLSDHDTF MSMAFE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	874	903	KKRKEFLIIRQRIVKIQAHVRGHQVRKKYK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64220.2	0.0	CAMTA family protein