PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027106275.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

CAMTA

Protein Properties

Length: 1062aa MW: 118382 Da PI: 6.0903

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027106275.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	182.5	4.9e-57	20	136	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 +e ++rwl++ ei++iL n++k+ +t e++ +p sgs++L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+v++l+cyYah+een++fqr XP_027106275.1 20 SEaQHRWLRPAEICEILRNYQKFYITPEPPVKPASGSVFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDMLHCYYAHGEENENFQR 114 4449***************************************************************************************** PP CG-1 97 rcywlLeeelekivlvhylevk 118 r+yw+Le++l +iv+vhylevk XP_027106275.1 115 RSYWMLEQDLMHIVFVHYLEVK 136 *****************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 1062 aa Download sequence
MAGSGSQNLG FRLDIKQILS EAQHRWLRPA EICEILRNYQ KFYITPEPPV KPASGSVFLF 60 DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSVDMLH CYYAHGEENE NFQRRSYWML 120 EQDLMHIVFV HYLEVKGNKA NIQCLKDAGT VSSNSQDDSS LSFGSPANSD RLASPYTDMT 180 SPTSTLTSAC EDAESEINHP ASSTFHPYLE TTQEDFRGLE NLDAGFSSSY NVLQSLGSQP 240 TSSASVHDGR TVDHPESNFV PGVERTLDSA SWEEVLGQCT TGMVGGGQKS WNPPAHQANW 300 QGDCLSPMQG VPFGQNLIPD SAYYGKGSLW EQKSLSALLQ SAADPFYMRP DGQEDEAVER 360 DVQKLRQNVE AGYMMSYKAE NGMPSAGSGN CSLVLKQPHL SGIQAEESLK KVDSFSRWMA 420 KELGEVEELP LQSTNGYSWS VIQTEDVVGD SCTPTQLQLD ADTLNFSLSQ DQLFSITDFS 480 PNWAYSRLET KVLITGRFLK SGQEFTRYKW SCMFGELEVP AEVLSEGVLC CHAPPHKAGL 540 VPFYVTCSNR LACSEVREFE YRAGPSQEID FADIPGSDAI EMHLQRRLEK LFLTGPIGST 600 QSVSETITDK NVVVNKIFLL MEAEYNQMAT LSPRDVSPPK GIEEQHGEKL LKEKFYTWLI 660 QKVTEGGKGP SLLDDEGQGV LHLAAALGFN WAIKPVIISG ISIDFRDVNG WTALHWAALC 720 GREDTVAVLV SLGAAPGALT DPSAEHPLGR TPADLASANG HKGIAGFLAE CSLTTHLSRL 780 AVKDSKDDDT LQYSEAKAIK TVSERVASPI TEQDVPDSLS LKDSMAAVSN ATQAAARIHQ 840 IFRIQSFQRK QLDIQHINES SSMDEHTLSL IAAKTSRLGK NDWTAHGAAI SIQKKFRGWK 900 KRKEFLIIRQ RIVKIQAHVR GHQVRKKYKT IIWSVGILEK VILRWRRKGS GLRGFRPDAV 960 AKCPSAENMP RKDDDYDFLQ EGRKQTEERL QKALSRVKSM AQYPEARAQY RRLLTVAEGF 1020 RETEDTSNPT LSGSEDVSYA DEELFDVEKL SDHDTFMSMA FE

Sequence ? help Back to Top

Protein Sequence Length: 1062 aa Download sequence

MAGSGSQNLG FRLDIKQILS EAQHRWLRPA EICEILRNYQ KFYITPEPPV KPASGSVFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSVDMLH CYYAHGEENE NFQRRSYWML  120
EQDLMHIVFV HYLEVKGNKA NIQCLKDAGT VSSNSQDDSS LSFGSPANSD RLASPYTDMT  180
SPTSTLTSAC EDAESEINHP ASSTFHPYLE TTQEDFRGLE NLDAGFSSSY NVLQSLGSQP  240
TSSASVHDGR TVDHPESNFV PGVERTLDSA SWEEVLGQCT TGMVGGGQKS WNPPAHQANW  300
QGDCLSPMQG VPFGQNLIPD SAYYGKGSLW EQKSLSALLQ SAADPFYMRP DGQEDEAVER  360
DVQKLRQNVE AGYMMSYKAE NGMPSAGSGN CSLVLKQPHL SGIQAEESLK KVDSFSRWMA  420
KELGEVEELP LQSTNGYSWS VIQTEDVVGD SCTPTQLQLD ADTLNFSLSQ DQLFSITDFS  480
PNWAYSRLET KVLITGRFLK SGQEFTRYKW SCMFGELEVP AEVLSEGVLC CHAPPHKAGL  540
VPFYVTCSNR LACSEVREFE YRAGPSQEID FADIPGSDAI EMHLQRRLEK LFLTGPIGST  600
QSVSETITDK NVVVNKIFLL MEAEYNQMAT LSPRDVSPPK GIEEQHGEKL LKEKFYTWLI  660
QKVTEGGKGP SLLDDEGQGV LHLAAALGFN WAIKPVIISG ISIDFRDVNG WTALHWAALC  720
GREDTVAVLV SLGAAPGALT DPSAEHPLGR TPADLASANG HKGIAGFLAE CSLTTHLSRL  780
AVKDSKDDDT LQYSEAKAIK TVSERVASPI TEQDVPDSLS LKDSMAAVSN ATQAAARIHQ  840
IFRIQSFQRK QLDIQHINES SSMDEHTLSL IAAKTSRLGK NDWTAHGAAI SIQKKFRGWK  900
KRKEFLIIRQ RIVKIQAHVR GHQVRKKYKT IIWSVGILEK VILRWRRKGS GLRGFRPDAV  960
AKCPSAENMP RKDDDYDFLQ EGRKQTEERL QKALSRVKSM AQYPEARAQY RRLLTVAEGF  1020
RETEDTSNPT LSGSEDVSYA DEELFDVEKL SDHDTFMSMA FE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	900	929	KKRKEFLIIRQRIVKIQAHVRGHQVRKKYK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64220.2	0.0	CAMTA family protein