PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027106179.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GATA
Protein Properties Length: 363aa    MW: 39899.3 Da    PI: 5.0077
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027106179.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.51.2e-15203239135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg+++  Tp +Rrgp g++tLCnaCGl+++ kg+
  XP_027106179.1 203 CQHCGVSEksTPAMRRGPGGPRTLCNACGLMWANKGT 239
                     **********************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    
MASTMNGRRR HKRPYKDRYV NVPFQVDEDG SAGGFDADDI GAVDERINSG AREMRAVNSM  60
PIATILTSPG GAPMASRTSE LTISFEGEVY VFPAVPPEKV QAVLLLLGGR DVPRSIRSSE  120
FLLQQNYDGS SQPNVSRRIA SLVRFREKRK ERCFEKKIRY TCRKEVAQRM HRKNGQFASL  180
KDAGKAAENW ESGEVTPHQE HVCQHCGVSE KSTPAMRRGP GGPRTLCNAC GLMWANKGTL  240
RDLTKGGRSA YFDQSDPETP EMKASSMEPE NSYHNQDEEG SSEDAKPMFV ESGCPSLGPN  300
AQDLLETAQG LSGDSPVGLG NSSINLDEQQ ETLDELANAS GTEFEIPSNF DEQVWLSSNA  360
DLE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.28e-56GATA family protein