PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027106178.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GATA
Protein Properties Length: 364aa    MW: 40071.5 Da    PI: 5.2207
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027106178.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.51.2e-15204240135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg+++  Tp +Rrgp g++tLCnaCGl+++ kg+
  XP_027106178.1 204 CQHCGVSEksTPAMRRGPGGPRTLCNACGLMWANKGT 240
                     **********************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    
MASTMNGRRR HKRPYKDRYV NVPFQVDEDG SAGGFDADDI GAVDERINSG AREMRAVNSM  60
PIATILTSPG GAPMASRTSE LTISFEGEVY VFPAVPPEKA VLLLLGGRDV PRSIRSSEFL  120
LQQNYDGSSQ PNVSRRIASL VRFREKRKER CFEKKIRYTC RKEVAQRMHR KNGQFASLKD  180
AGKAAENWES GEVTPHQEHV SRRCQHCGVS EKSTPAMRRG PGGPRTLCNA CGLMWANKGT  240
LRDLTKGGRS AYFDQSDPET PEMKASSMEP ENSYHNQDEE GSSEDAKPMF VESGCPSLGP  300
NAQDLLETAQ GLSGDSPVGL GNSSINLDEQ QETLDELANA SGTEFEIPSN FDEQVWLSSN  360
ADLE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-50GATA family protein