PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027106176.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | GATA | ||||||||
Protein Properties | Length: 367aa MW: 40284.7 Da PI: 5.0141 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 48.4 | 1.2e-15 | 207 | 243 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+++ Tp +Rrgp g++tLCnaCGl+++ kg+ XP_027106176.1 207 CQHCGVSEksTPAMRRGPGGPRTLCNACGLMWANKGT 243 **********************************997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence |
MASTMNGRRR HKRPYKDRYV NVPFQVDEDG SAGGFDADDI GAVDERINSG AREMRAVNSM 60 PIATILTSPG GAPMASRTSE LTISFEGEVY VFPAVPPEKV QAVLLLLGGR DVPRSIRSSE 120 FLLQQNCKTT DDGSSQPNVS RRIASLVRFR EKRKERCFEK KIRYTCRKEV AQRMHRKNGQ 180 FASLKDAGKA AENWESGEVT PHQEHVCQHC GVSEKSTPAM RRGPGGPRTL CNACGLMWAN 240 KGTLRDLTKG GRSAYFDQSD PETPEMKASS MEPENSYHNQ DEEGSSEDAK PMFVESGCPS 300 LGPNAQDLLE TAQGLSGDSP VGLGNSSINL DEQQETLDEL ANASGTEFEI PSNFDEQVWL 360 SSNADLE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 6e-56 | GATA family protein |