PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027106172.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GATA
Protein Properties Length: 370aa    MW: 40684.2 Da    PI: 5.2264
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027106172.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.41.3e-15210246135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg+++  Tp +Rrgp g++tLCnaCGl+++ kg+
  XP_027106172.1 210 CQHCGVSEksTPAMRRGPGGPRTLCNACGLMWANKGT 246
                     **********************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    
MASTMNGRRR HKRPYKDRYV NVPFQVDEDG SAGGFDADDI GAVDERINSG AREMRAVNSM  60
PIATILTSPG GAPMASRTSE LTISFEGEVY VFPAVPPEKV QAVLLLLGGR DVPRSIRSSE  120
FLLQQNCKTT DDGSSQPNVS RRIASLVRFR EKRKERCFEK KIRYTCRKEV AQRMHRKNGQ  180
FASLKDAGKA AENWESGEVT PHQEHVSRRC QHCGVSEKST PAMRRGPGGP RTLCNACGLM  240
WANKGTLRDL TKGGRSAYFD QSDPETPEMK ASSMEPENSY HNQDEEGSSE DAKPMFVESG  300
CPSLGPNAQD LLETAQGLSG DSPVGLGNSS INLDEQQETL DELANASGTE FEIPSNFDEQ  360
VWLSSNADLE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.23e-54GATA family protein