PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027106125.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 333aa MW: 37687.7 Da PI: 6.8455

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027106125.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.1	6.6e-13	158	205	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h ++Er+RR+++ ++f L l+P + kK++Ka++L A++Y+k+Lq XP_027106125.1 158 QDHIMAERKRREKLSQRFIALSALVPGL-----KKMDKASVLGDAIKYLKQLQ 205 6799**********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence
MEIYNFRSLA ELGMDHGFSN HWSMSSLDEL STISSMAAPY HDNLHMHSSQ PIFSQKHSME 60 MSPNDANRPM KQQKTSSWSS SNSDHLSNAN FHVVNSSIYS DQVATVKPKE ETMSSVTMSF 120 SPDMIVSHGS YDQNQNYVFK ASQGAKRVST NARLTQAQDH IMAERKRREK LSQRFIALSA 180 LVPGLKKMDK ASVLGDAIKY LKQLQEKVKT LEEEARENSM ERVVYVSKYT LCDDGHEDSS 240 SDENFCDEPL PEVEAKFCNK EVLIRVHCEK RKGIQEKTIA EIEKLPLSVI NNSAMTFGGS 300 TLDITVTAKM EEEFAMPIKD LVKHLRSALK KFM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	164	169	ERKRRE
2	165	170	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	1e-62	bHLH family protein