PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027106045.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | HB-PHD | ||||||||
Protein Properties | Length: 883aa MW: 97845.9 Da PI: 4.5915 | ||||||||
Description | HB-PHD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 34 | 5e-11 | 713 | 757 | 12 | 56 |
HHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 12 leeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++L e F++n+yp+ +e LAk+lgL +qV+ WF N R + XP_027106045.1 713 VQRLLESFRENQYPKNGVKESLAKELGLRIQQVSKWFENARWSCR 757 68899************************************8776 PP | |||||||
2 | PHD | 38.1 | 3.5e-13 | 341 | 396 | 1 | 51 |
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ Cg+ + +++++lCdg C++ fH+ Cl+++l +e++p + wlC+ C++k XP_027106045.1 341 FCAKCGSkdLTLDNDIILCDGaCERGFHQFCLEPPLLKEDIPPDeeGWLCPGCDCK 396 699***965555********66******************999899*******985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 883 aa Download sequence |
MNMDVVRESS LSESHLSPEQ RALELGNGFV SGNRCTESVI QKCEMVKDAH IGPEETGIRK 60 SNANSVEILK TVDGLTNNSD FESFRLHNIQ YLPESANAEP LEQKQVVGDD NVDNRLTETE 120 IAAPDLTGLE EYIQISVSPC ENVAVVPAFA SLGSEPQDAS MHVDPQQTES TQKGAVNAGG 180 ESVLDKRTPF ESRKRKSTST IPVTARVLRS RSQEKSKESE KKDVVEDAAT EAYRRKRRKK 240 KQRRNIPVNE FSRIRAHLRY LLHRIKYEQN LIDAYSGEGW KGQSLEKIKP EKELQRAKSQ 300 IFRYKLKIRD LFRQIDLLLA EGKLPESLFD SDGQIDSEDI FCAKCGSKDL TLDNDIILCD 360 GACERGFHQF CLEPPLLKED IPPDEEGWLC PGCDCKVDCI ELLSDFQGSN LSVLDKWEKV 420 FPEEAAAAAS GMKMDDYSGL PSDDSDDDDY DPDKPEVDNM VLGEESSSDE SDYFSASEEP 480 VSAVKAEQIL GLPSDDSEDD DFDPSAADHG ELAKQESSSS DFSSDSEDFG AMFHEKEPLG 540 EEAGHVSSVS TQSNLPVGSI GQIFKVGRDK RHSLSDELSF LLESNDAPVS GKRHVERLDY 600 KKLHEETYGD TSSDSSDEDY GETVGPRRRK KSTGKAILVP SNEPETIHKG ADIKDENCNQ 660 KDFEMTPVEK INKKFEIEGS NNMSVDSPRI STEGGSSGKR TGRPYQRLGD GIVQRLLESF 720 RENQYPKNGV KESLAKELGL RIQQVSKWFE NARWSCRHSS RMDSKMTGTT SINGTSLPEI 780 NEKVPKHGEQ SNLESATCNE EGKMALPQTN PCVEGQHIAG TGEGNSAIDF SPDSINGRCT 840 QVDDQMPDQL SSAEETSKQV SNVNASKSQS VRRSGRLQAR SGN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 192 | 197 | SRKRKS |
2 | 234 | 240 | RRKRRKK |
3 | 234 | 242 | RRKRRKKKQ |
4 | 235 | 241 | RRKRRKK |
5 | 236 | 244 | KRRKKKQRR |
6 | 237 | 243 | RRKKKQR |
7 | 626 | 630 | PRRRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19510.1 | 4e-91 | HB-PHD family protein |