PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027106044.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

HB-PHD

Protein Properties

Length: 902aa MW: 100039 Da PI: 4.5954

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027106044.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	34	5.1e-11	732	776	12	56
HHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 12 leeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++L e F++n+yp+ +e LAk+lgL +qV+ WF N R + XP_027106044.1 732 VQRLLESFRENQYPKNGVKESLAKELGLRIQQVSKWFENARWSCR 776 68899************************************8776 PP
2	PHD	38.1	3.6e-13	360	415	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ Cg+ + +++++lCdg C++ fH+ Cl+++l +e++p + wlC+ C++k XP_027106044.1 360 FCAKCGSkdLTLDNDIILCDGaCERGFHQFCLEPPLLKEDIPPDeeGWLCPGCDCK 415 699*965555****66**************999899*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 902 aa Download sequence
MTNRTILATF YSSISTYEIM NMDVVRESSL SESHLSPEQR ALELGNGFVS GNRCTESVIQ 60 KCEMVKDAHI GPEETGIRKS NANSVEILKT VDGLTNNSDF ESFRLHNIQY LPESANAEPL 120 EQKQVVGDDN VDNRLTETEI AAPDLTGLEE YIQISVSPCE NVAVVPAFAS LGSEPQDASM 180 HVDPQQTEST QKGAVNAGGE SVLDKRTPFE SRKRKSTSTI PVTARVLRSR SQEKSKESEK 240 KDVVEDAATE AYRRKRRKKK QRRNIPVNEF SRIRAHLRYL LHRIKYEQNL IDAYSGEGWK 300 GQSLEKIKPE KELQRAKSQI FRYKLKIRDL FRQIDLLLAE GKLPESLFDS DGQIDSEDIF 360 CAKCGSKDLT LDNDIILCDG ACERGFHQFC LEPPLLKEDI PPDEEGWLCP GCDCKVDCIE 420 LLSDFQGSNL SVLDKWEKVF PEEAAAAASG MKMDDYSGLP SDDSDDDDYD PDKPEVDNMV 480 LGEESSSDES DYFSASEEPV SAVKAEQILG LPSDDSEDDD FDPSAADHGE LAKQESSSSD 540 FSSDSEDFGA MFHEKEPLGE EAGHVSSVST QSNLPVGSIG QIFKVGRDKR HSLSDELSFL 600 LESNDAPVSG KRHVERLDYK KLHEETYGDT SSDSSDEDYG ETVGPRRRKK STGKAILVPS 660 NEPETIHKGA DIKDENCNQK DFEMTPVEKI NKKFEIEGSN NMSVDSPRIS TEGGSSGKRT 720 GRPYQRLGDG IVQRLLESFR ENQYPKNGVK ESLAKELGLR IQQVSKWFEN ARWSCRHSSR 780 MDSKMTGTTS INGTSLPEIN EKVPKHGEQS NLESATCNEE GKMALPQTNP CVEGQHIAGT 840 GEGNSAIDFS PDSINGRCTQ VDDQMPDQLS SAEETSKQVS NVNASKSQSV RRSGRLQARS 900 GN

Sequence ? help Back to Top

Protein Sequence Length: 902 aa Download sequence

MTNRTILATF YSSISTYEIM NMDVVRESSL SESHLSPEQR ALELGNGFVS GNRCTESVIQ  60
KCEMVKDAHI GPEETGIRKS NANSVEILKT VDGLTNNSDF ESFRLHNIQY LPESANAEPL  120
EQKQVVGDDN VDNRLTETEI AAPDLTGLEE YIQISVSPCE NVAVVPAFAS LGSEPQDASM  180
HVDPQQTEST QKGAVNAGGE SVLDKRTPFE SRKRKSTSTI PVTARVLRSR SQEKSKESEK  240
KDVVEDAATE AYRRKRRKKK QRRNIPVNEF SRIRAHLRYL LHRIKYEQNL IDAYSGEGWK  300
GQSLEKIKPE KELQRAKSQI FRYKLKIRDL FRQIDLLLAE GKLPESLFDS DGQIDSEDIF  360
CAKCGSKDLT LDNDIILCDG ACERGFHQFC LEPPLLKEDI PPDEEGWLCP GCDCKVDCIE  420
LLSDFQGSNL SVLDKWEKVF PEEAAAAASG MKMDDYSGLP SDDSDDDDYD PDKPEVDNMV  480
LGEESSSDES DYFSASEEPV SAVKAEQILG LPSDDSEDDD FDPSAADHGE LAKQESSSSD  540
FSSDSEDFGA MFHEKEPLGE EAGHVSSVST QSNLPVGSIG QIFKVGRDKR HSLSDELSFL  600
LESNDAPVSG KRHVERLDYK KLHEETYGDT SSDSSDEDYG ETVGPRRRKK STGKAILVPS  660
NEPETIHKGA DIKDENCNQK DFEMTPVEKI NKKFEIEGSN NMSVDSPRIS TEGGSSGKRT  720
GRPYQRLGDG IVQRLLESFR ENQYPKNGVK ESLAKELGLR IQQVSKWFEN ARWSCRHSSR  780
MDSKMTGTTS INGTSLPEIN EKVPKHGEQS NLESATCNEE GKMALPQTNP CVEGQHIAGT  840
GEGNSAIDFS PDSINGRCTQ VDDQMPDQLS SAEETSKQVS NVNASKSQSV RRSGRLQARS  900
GN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	211	216	SRKRKS
2	253	259	RRKRRKK
3	253	261	RRKRRKKKQ
4	254	260	RRKRRKK
5	255	263	KRRKKKQRR
6	256	262	RRKKKQR
7	645	649	PRRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	5e-91	HB-PHD family protein