PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027105971.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 269aa    MW: 30053.8 Da    PI: 8.9632
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027105971.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.41.4e-1495138855
                     HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      Er RR++++s f++L++llP++     +K +K++i+ +Av+YI+sLq
  XP_027105971.1  95 TERERRKKMRSMFSNLQSLLPQL----PPKADKSTIVDEAVNYIRSLQ 138
                     7*********************6....39******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    
MSDGGSQDNF LWDNEVWALS NSDNSGRSDE NQPAKKFSES NNSNCPTPRE AEPRVGPSLG  60
KRKRKNGKQP SVEGNDQAAE GKGGAGADHE LHIWTERERR KKMRSMFSNL QSLLPQLPPK  120
ADKSTIVDEA VNYIRSLQQT LQRLQKQKLE MIRGLTTINY DPSMITPHRL AMDSREAFLA  180
DQGSSSQLSS NPNPLGVARF PTSFRTWATP NMVLNVCGDK AHINICCPKK LGLFSAICYF  240
LEKHKLEVVS AHVSSDNYRS LYMIQAQDS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.11e-38bHLH family protein