PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027105970.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 300aa MW: 33533.8 Da PI: 7.9242

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027105970.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.2	1.7e-14	95	138	8	55
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 Er RR++++s f++L++llP++ +K +K++i+ +Av+YI+sLq XP_027105970.1 95 TERERRKKMRSMFSNLQSLLPQL----PPKADKSTIVDEAVNYIRSLQ 138 7*******************6....39****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence
MSDGGSQDNF LWDNEVWALS NSDNSGRSDE NQPAKKFSES NNSNCPTPRE AEPRVGPSLG 60 KRKRKNGKQP SVEGNDQAAE GKGGAGADHE LHIWTERERR KKMRSMFSNL QSLLPQLPPK 120 ADKSTIVDEA VNYIRSLQQT LQRLQKQKLE MIRGLTTINY DPSMITPHRL AMDSREAFLA 180 DQGSSSQLSS NPNPLGVARF PTSFRTWATP NMVLNVCGDK AHINICCPKK LGLFSAICYF 240 LEKHKLEVVS AHVSSDNYRS LYMIQAQASG AVDHQYPEAF SFDDIFHLAT GEMMMYMSSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49770.1	5e-43	bHLH family protein