PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027105744.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 443aa MW: 49002.8 Da PI: 6.3271

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027105744.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.6	5.9e-10	252	299	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_027105744.1 252 SHSLAERVRREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 299 8************************....999***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence
MDGGFDRMSV LERQEAIWMK WQEEQLHHPP PLPLQVRQLG HDFFNSTDQL NVFSSPAQAH 60 QHFHGFITND HHFSGLLTPG ILKQDPDVQT TTGCDNFTNI GGPSAGVGAC ELENITGFGM 120 DYAVSRTVSC PPAMAAAMAD VAAAASKGRE TTLPEKLSSS AGRESFKKRK ADKTQNQKEA 180 TEQEGKDKRS RGCQKEEDSK VTEQKSTSKN TATNNTINRE ASETSKENSK ISEVQKPDYI 240 HVRARRGQAT DSHSLAERVR REKISERMKY LQDLVPGCNK ITGKAGMLDE IINYVQSLQR 300 QVEFLSMKLA AINPRLDFNI DNISTKEIFA VGTSELHTIG STSEIINPLN YPFDSIQQVV 360 SCCGLETGAD PSEMALRRTI SAPVSIHETL RESPYFSQIH PSTTWDAELQ SLYALEFQQG 420 KSTSLLSQPC TGYLGGSNVK MEI

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence

MDGGFDRMSV LERQEAIWMK WQEEQLHHPP PLPLQVRQLG HDFFNSTDQL NVFSSPAQAH  60
QHFHGFITND HHFSGLLTPG ILKQDPDVQT TTGCDNFTNI GGPSAGVGAC ELENITGFGM  120
DYAVSRTVSC PPAMAAAMAD VAAAASKGRE TTLPEKLSSS AGRESFKKRK ADKTQNQKEA  180
TEQEGKDKRS RGCQKEEDSK VTEQKSTSKN TATNNTINRE ASETSKENSK ISEVQKPDYI  240
HVRARRGQAT DSHSLAERVR REKISERMKY LQDLVPGCNK ITGKAGMLDE IINYVQSLQR  300
QVEFLSMKLA AINPRLDFNI DNISTKEIFA VGTSELHTIG STSEIINPLN YPFDSIQQVV  360
SCCGLETGAD PSEMALRRTI SAPVSIHETL RESPYFSQIH PSTTWDAELQ SLYALEFQQG  420
KSTSLLSQPC TGYLGGSNVK MEI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34530.1	3e-58	bHLH family protein